Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1138 ATGGATGGGAAGAACTCTCTACAAATAACTACAAGTGGCACTGGTCCTTATGATGATGATGGACATGCCAAAAGGACCGGGAATTTGAAAAGTGCTGTAGCTCATATCATTACTGCTGTTATTGGTTCTGGTGTTCTTTCTCTTGCATGGAGCACTTCCCAATTAGGATGGATTGGAGGGCCAGTTGCCTTGCTTTGTTGTGCAATTGTCACCTATATTTCTTCATTCCTCCTGTCTGATTGCTACAGAACTCCTGATCCCGTCACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTTTACCTTGGTAATAAAAGGACATGGGTAGCTGGCTTCCTTCAATTTTTGGCTTTATATGGGACTAGTATTGCTTATGTAATTACCACAGCAACCAGTCTTAGTGCAATTCTGAGGTCAAATTGTTATCACAAGAGAGGGCATGAGGCTCCATGTCATTATGGGGGCAATCTGTATATGGCACTGTTTGGACTTGTTCAGATTGTTATGTCATTCATACCGGATCTCCATAACATGGCATGGGTTTCAGTTGTTGCGGCAATTATGTCCTTTACTTACTCATTCATTGGACTAGGACTTGGCATAGCAACAGTCATAAAAAATGGAAGAATTATGGGGAGCTTGACAGGAGTACCAACTGATAAAATTGCTGACAAATTCTGGTTAGTCTTCCAAGCACTTGGTGACATTGCCTTTGCCTATCCATACTCCATTCTCCTTCTTGAGATACAGGACACTCTAGAGTCTCCTCCACCAGAAAATCAAACCATGAAAAAGGCCTCCATGGCTGCAATCTTCATCACAACATTCTTCTACCTATGCTGTGGATGCTTTGGATATGCAGCTTTTGGAAATGATACACCAGGAAACCTCTTGACAGGGTTTGGGTTTTTTGAGCCTTACTGGCTCATTGACCTTGCTAATACTTGcatcattcttcatttggtggGAGGATATCAGATTTACAGTCAACCAATATACAGCACTGCTGATAGATGGGCTTCAAGAAAATTCCCCAACAGTGGCTTTGTGAATAATTTCTACAAAGTGAAACTGCCTTTGCTGCCTGGTTTTCAGATAAATCTTTTCAGGTTCTGTTTTAGAACAGCCTATGTGATTTCAACCACTGGTTTTGCAATCTTGTTTCCTTACTTCAACCAAGTTCTAGGAGTGTTAGGAGCCATAAACTTCTGGCCATTGGCTATATACTTCCCAGTAGAGATGTACTTTGTACAGAAGAAAATTGCAGCTTGGAGTAGCAAATGGATTGTTCTCAGAACATTCAGCTTTGCTTGCTTTTTTGTGACCGTAATGGGCCTCGTTGGGTCACTTGAAGGAATCGTACGTGCCAAAATTAGCTGA 1386 0.4105 MDGKNSLQITTSGTGPYDDDGHAKRTGNLKSAVAHIITAVIGSGVLSLAWSTSQLGWIGGPVALLCCAIVTYISSFLLSDCYRTPDPVTGKRNYSYMDAVRVYLGNKRTWVAGFLQFLALYGTSIAYVITTATSLSAILRSNCYHKRGHEAPCHYGGNLYMALFGLVQIVMSFIPDLHNMAWVSVVAAIMSFTYSFIGLGLGIATVIKNGRIMGSLTGVPTDKIADKFWLVFQALGDIAFAYPYSILLLEIQDTLESPPPENQTMKKASMAAIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFFEPYWLIDLANTCIILHLVGGYQIYSQPIYSTADRWASRKFPNSGFVNNFYKVKLPLLPGFQINLFRFCFRTAYVISTTGFAILFPYFNQVLGVLGAINFWPLAIYFPVEMYFVQKKIAAWSSKWIVLRTFSFACFFVTVMGLVGSLEGIVRAKIS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1138 461 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 5 459 - -
Ssu9g1138 461 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g1138 461 MobiDBLite consensus disorder prediction 1 15 - -
Ssu9g1138 461 Pfam Transmembrane amino acid transporter protein 26 455 IPR013057 -
Ssu9g1138 461 PANTHER OS05G0424000 PROTEIN-RELATED 5 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1138 Ssu-Chr9 43244677 43247676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1138 11 443 Organic Solute Cotransporters AT1G77380 54.713 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1138 K24917 - gmx:100818535 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1138 9 43244677 43247676 Ssu6g3619 6 79912919 79916288 PCT