Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1104 ATGATTTTTCCTGAAAGCTTTTTCTTTATATCTCAGAATATGCATCAGGGCTATCCAGCTGAAACGTTAATACGGTTTCTGAAAGCAAGGGATTGGAATGTTGCCAAGGCCCATAAAATGttaattgattgtttgaacTGGAGAGTGGAAAATGAGATTGACAATGTTTTAAGGAAGCCTATCCTTGCGGATGTGTACAGAGATGTACGGGATTCTCAACTCATAGGAATGTCTGGTTACTCTAAGGAGGGTCTACCGGTCATTGCTGTTGGTGTTGGGCTCAGTACATATGATAAAGCATCTgacaaatattatatacaatcacACATCCAAATGAATGAATATAGGGATCGAGTGATCTTGccaaCAGCTACAAGGAAGCATGGACGATACATTGGCACCTGTGTGAAAGTCCTGGATATGACTGGTTTAAAATTTTCAGCACTGAACCAATTGAGGTTGTTGACTGCTATATCTACAATAGATGACTTGAACTACCCAGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGATTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATAATGGATCAGGAAACACTGAAAATTGTTTCTCCTCCAATCATGTCTTCCATCAACAACTCTACAACCACATCAAGCAGCAAGCTATCATTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTATGTAGACATACCAGAGCCAGACCCAGGTGATACCAAAATAGCCAGGACCATAGAAACCGAGTTCCACAAATTGGAGAATCAGAATGGCTTTACCAACTCACGAAATGGTCTTGCAGTTAATGGCCATTGA 963 0.3946 MIFPESFFFISQNMHQGYPAETLIRFLKARDWNVAKAHKMLIDCLNWRVENEIDNVLRKPILADVYRDVRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQMNEYRDRVILPTATRKHGRYIGTCVKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNGSGNTENCFSSNHVFHQQLYNHIKQQAIIMESISPIRQGSFYVDIPEPDPGDTKIARTIETEFHKLENQNGFTNSRNGLAVNGH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1104 320 SUPERFAMILY CRAL/TRIO N-terminal domain 14 60 IPR036273 -
Ssu9g1104 320 CDD SEC14 66 224 IPR001251 -
Ssu9g1104 320 Pfam CRAL/TRIO domain 73 224 IPR001251 -
Ssu9g1104 320 PANTHER - 12 319 - -
Ssu9g1104 320 Gene3D - 10 268 IPR036865 -
Ssu9g1104 320 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 62 233 IPR001251 -
Ssu9g1104 320 SMART CRAL_TRIO_N_2 19 44 IPR011074 -
Ssu9g1104 320 Pfam CRAL/TRIO, N-terminal domain 17 43 IPR011074 -
Ssu9g1104 320 PANTHER OS09G0258000 PROTEIN 12 319 - -
Ssu9g1104 320 SUPERFAMILY CRAL/TRIO domain 64 224 IPR036865 -
Ssu9g1104 320 SMART sec14_4 69 230 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1104 Ssu-Chr9 42666458 42670063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1104 13 304 Acyl Lipid Metabolism Gene Families AT1G55840 67.918 2.16e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1104 - - gmx:100817955 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1104 9 42666458 42670063 Ssu9g1104 9 42666458 42670063 ECH
Ssu9g1104 9 42666458 42670063 Ssu6g3584 6 79458278 79462159 PCT