Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3584 ATGTGTTTTACTAATCAGGAAGCTATCAAGCAGTTGCAGTCCCTTATGGAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAACATGCACCAGGGCTATCCAACAGAAACATTGGTACGGTTTCTCAAAGCAAGGCACGGGAATGTTGTCAAAGCCAATAAAATGTTAACTGATTGTTTACAATGGAGAGTGGAAAATGAGATTGACAATGTTTTAGCGAAGCCTATACCCCCTGATTTGTACAGACGTTTGCGAGATTCTCAACTTGTAGGAATATCTGGTTTCTCAAAGGAGGGCCTACCTGTCATTGCTGTTGGTGTTGGGCTCAGCACATTTGATGAAGTGTTTGACAAATACTATGTACAGTCGCACATCCAAATGAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACAAAGAATCATGGACGACACATTGACACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCACTGAACCAATTGAAGCTTTTGACTGCTATATCTACAATAGATGACTTAAACTATCCAGAAAAGACAGAAGCATATTATATCGTTAACGTTCCATATGTATTCTCAGCATGTTGGAAGGTTGTAAAGTCACTTTTGCAAGAAAGAACAAGGAGGAAAGTCCACGTGCTGAAAGGTTGTGGCATGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTACCCCGACATCATGCAGCTGGAAATACTGAAAATTGTTTCTCCTTTGATCATGTCTTCCATAAACAACTCTATAATTACATCAAGCAGCAAGCTATATTAATGGAATCCGTATCAACAATCAGACATAGTTCTTTCCATGTAGACTTACCGGAGCCAGACCCGGATGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCACAAACTGGAAAGTCAGAATGGCCTTGCCAACTGA 981 0.4077 MCFTNQEAIKQLQSLMENLDEQQKNTFQNMHQGYPTETLVRFLKARHGNVVKANKMLTDCLQWRVENEIDNVLAKPIPPDLYRRLRDSQLVGISGFSKEGLPVIAVGVGLSTFDEVFDKYYVQSHIQMNEYRDRVILPTATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAISTIDDLNYPEKTEAYYIVNVPYVFSACWKVVKSLLQERTRRKVHVLKGCGMEELLKVMDYASLPHFCRKEDSRVPRHHAAGNTENCFSFDHVFHKQLYNYIKQQAILMESVSTIRHSSFHVDLPEPDPDDAKIAKTIETEFHKLESQNGLAN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3584 326 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Ssu6g3584 326 SUPERFAMILY CRAL/TRIO domain 80 240 IPR036865 -
Ssu6g3584 326 Coils Coil 5 29 - -
Ssu6g3584 326 Gene3D - 4 273 IPR036865 -
Ssu6g3584 326 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
Ssu6g3584 326 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Ssu6g3584 326 PANTHER - 1 326 - -
Ssu6g3584 326 PANTHER OS09G0258000 PROTEIN 1 326 - -
Ssu6g3584 326 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Ssu6g3584 326 SMART sec14_4 85 246 IPR001251 -
Ssu6g3584 326 CDD SEC14 90 240 IPR001251 -
Ssu6g3584 326 SUPERFAMILY CRAL/TRIO N-terminal domain 6 73 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3584 Ssu-Chr6 79458278 79462159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3584 29 318 Acyl Lipid Metabolism Gene Families AT1G55840 68.041 3.04e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3584 - - gmx:100815791 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3584 6 79458278 79462159 Ssu6g3584 6 79458278 79462159 ECH
Ssu9g1104 9 42666458 42670063 Ssu6g3584 6 79458278 79462159 PCT