Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1098 ATGGCGGTGGAGGAGTATTATCCATTGTTTGAGACAAGGAGAGCCAAAGGAAGGCTCATTTACATAATCTTCTCATTCTCATTGTTTGTGGGCATTTGCTTCATCTGGTTTTACAGAGTGAGTCACATACCCAGAGAAGGTGAAGATGGGAAGTGGGCTTGGATTGGCTTGCTTTGTGCTGAACTATGGTTTGGTCTCTACTGGCTCCTCAGACACCCCTTCAGATGGAACCCTGTGTTCAGGCAACCTTTCAGACACAAACTCTCTCAAAGATATGAGAAGATATTACCAAGAGTGGACATCTTTGTGTGCACGGCAGACCCAGGAATTGAGCCACCCGTGATGGTGATTAACACAGTGTTATCGGTTGTGGCTTATGACTATCCACCAGAGAAGCTGAGTGTGTATCTTTCAGATGATGCTGCATCAGATATTACTTTCTATGCTCTCTTAGAGGCTTCCATCTTTGCCAAACACTGGCTTCCATTCTGCAAGAAATTCAAGGTGGAACCCACCTCACCGGCTGCTTATTTCAAGAGTATGGCCTCATCCACTCCCCCAAATAATGCCAAAGAATTGAGCACCATCAAGAAACTGTACCAAGATATGGAAAGTCGAATAGAAAATGCAGCCAAGGCGGGTCAAGTACCCGAAGAAGTACGCTCAAAGCATAAAGGATTTTCTCAGTGGGATTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATATTACTTCATGGAAAGGACTCGAGTGCCAAAGATGTGGATGGACATGTTATGCCCGTATTGGTATATTTGGCTCGCGAGAAAAGACCCCAAGTTGCACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGGAAATTATTCTTAATGTAGATTGTGACATGTACTCAAACAATTCCCAATCTCTAAGGGATGCACTCTGCTTCTTCATGGATGAAGTTAAAGGCCATGAAATTGCTTTTGTTCAAACTCCACAGTGTTTTGAGAATGTCACGAAGAATGATCTATATGGAGGGGCTCTACGAGTAATTTATGAGGTGGAATTCCTTGGTTTAGATGGACTTGGTGGACCTATGTATATTGGAACTGGTTGCTTTCACAGAAGAGAGACACTCTGTGGAAGAAAGTCCAAAGATCAATACAAGAATGATTGGAACGAAAATAAGAACATTGATCATATGAAAGAAGCAAGCTTGCATgaacttgaagaaaaatcaaAGGCTCTTGCAAGTTGTACCTATGAGGAAAACACATTATGGGGAAAAGAGATGGGACTACAATATGGTTGTTCAGTAGAGGATGTGATAACAGGATTGTCTATTAAATGTCGAGGATGGAAATCAGTGTACTATAATCCTCAAAGGAAAGCTTTCTTAGGTGTAGCTCCGACCACCTTGCCAGAAGCACTAGTTCAACATAAGAGATGGTCTGAAGGAGGCTTTCAGATTGTGCTTTCTAAGTATAGTCCTGCATGGTGTGCTTATGGATTGGTTGGTCCAGGTCTCCAAATGGCATATTGTTACTATAATCTATGGGTGCTTCTTTCCTTGCCTACTCTATATTACTGCATCATCCCTTCACTATATCTTCTCAAAGGCATTCCCTTATTTCCACAGATGTCAAGCCCATGGTTCGTACCTTTTGTGTATGTCATGCTTGGGGATTCTTCTTACTGCTTATTAGAGTTTTTGTGGTCAGGAGGCACAATCCAGGGTTGGTGGAATGACTTGCGGATGTGGCTTTATAAGAGAACAAGCTCTTACCTCTTTGCCTTAGTTGATACTATCAAGAAGTTTTCTGGCTTTTCAGAATCAGCCTTTGTAATATCTGCAAAGGTAGCAGAAGAAAAGGTTTCCCAACGATACGAAGAAGATGTTATGGAATTTGGAAACTCATCCCCAATGCTCACTTTACTGGCAACACTTGCTTTGCTTGATTTGTTTTGTCTTCTTGGCATGTTACTAAAGCAAGTATTCATAACTGAAGGGGGTCTCAGAATTTGTGAGACAATGGCATTGCAAGTTCTACTAAGTGGGGTTTTAGTTCTCATCAATGCACCAGTGTACCAAGGCCTCTACCTAAGAAAAGACAAAGGAAGATTACCAATATCTGTTGCAGTTAAATCAACAGCATTGGCTCTAGGTGCATGTGTTCTCTTTGTTGCCAtaggttaa 2214 0.4137 MAVEEYYPLFETRRAKGRLIYIIFSFSLFVGICFIWFYRVSHIPREGEDGKWAWIGLLCAELWFGLYWLLRHPFRWNPVFRQPFRHKLSQRYEKILPRVDIFVCTADPGIEPPVMVINTVLSVVAYDYPPEKLSVYLSDDAASDITFYALLEASIFAKHWLPFCKKFKVEPTSPAAYFKSMASSTPPNNAKELSTIKKLYQDMESRIENAAKAGQVPEEVRSKHKGFSQWDSYSSRRDHDTILQILLHGKDSSAKDVDGHVMPVLVYLAREKRPQVAHNFKAGAMNSLIRVSSMISNGEIILNVDCDMYSNNSQSLRDALCFFMDEVKGHEIAFVQTPQCFENVTKNDLYGGALRVIYEVEFLGLDGLGGPMYIGTGCFHRRETLCGRKSKDQYKNDWNENKNIDHMKEASLHELEEKSKALASCTYEENTLWGKEMGLQYGCSVEDVITGLSIKCRGWKSVYYNPQRKAFLGVAPTTLPEALVQHKRWSEGGFQIVLSKYSPAWCAYGLVGPGLQMAYCYYNLWVLLSLPTLYYCIIPSLYLLKGIPLFPQMSSPWFVPFVYVMLGDSSYCLLEFLWSGGTIQGWWNDLRMWLYKRTSSYLFALVDTIKKFSGFSESAFVISAKVAEEKVSQRYEEDVMEFGNSSPMLTLLATLALLDLFCLLGMLLKQVFITEGGLRICETMALQVLLSGVLVLINAPVYQGLYLRKDKGRLPISVAVKSTALALGACVLFVAIG 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1098 737 Coils Coil 193 213 - -
Ssu9g1098 737 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 4 734 - -
Ssu9g1098 737 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 236 397 IPR029044 -
Ssu9g1098 737 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 180 IPR029044 -
Ssu9g1098 737 Pfam Cellulose synthase 99 397 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu9g1098 737 Pfam Cellulose synthase 418 736 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu9g1098 737 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 4 734 - -
Ssu9g1098 737 SUPERFAMILY Nucleotide-diphospho-sugar transferases 114 502 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1098 Ssu-Chr9 42555890 42568563 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1098 8 731 Glycosyltransferase AT1G55850 58.607 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1098 - - gmx:100785532 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1098 9 42555890 42568563 Ssu9g1098 9 42555890 42568563 ECH
Ssu9g1098 9 42555890 42568563 Ssu6g3579 6 79411888 79415273 PCT