Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3579 ATGAGACAAGAAGAGAGGATCGAAGGTATGGACAGCGGTGAATACTATTCATTGTTTGAGACTAGGAGAGACAGAGGAAGGCACATTCGCAGGCTCTTTACCATATCTTTGTTTGTGGCCATATGCTTCATCTGGGCTTTTCGATTGAGCCACATACCTGCAAACGGGGATAATGGCAAATGGGCTTGGCTTGGTTTGTTTGCAGCAGAACTGTGGTTCGGCCTGTACTGGCTCTTTGGTCAAGCCCTCCGCTGGAATCTGGTGTTCAGGAAAACTTTCAACAACAAACTCTCTCAAAGATATGAGAGTAGTTTGCCAAGAGTGGACATTTTTGTTTTCACGGCAGACCCGATCATTGAGCCTCCCATGATGGtgattaatacaatattatctGTAATGACTTATGACTATCCAGTTGAGAAGCTTAGTGTGTATCTCTCAGATGATGCTGGATCAAATATCACTTTTTATGCTCTTTTAGAAGCTTCTACCTTTGCCAAGCATTGGGTGCCATTCTGCAAGAAATTTAAGGTAGAACCAAGGTCACCTGATGCTTATTTTAATACCCTCATCTCAGCAAATCCACACGACCATAATCATGCCAAAGACTTGGCAAGCATTAAGaAATTATATGAAGATATGAAAAGGCGAATAGAAGATGTAGTCAAGTTGGGTGGAGTACCCAGTGAAGCACACTCAAAGCATAATGGATTTTCCCAATGGGATTCATATTCTTCTCGACATGATCACGACACAATACTTCAAGTAGATTAA 774 0.4134 MRQEERIEGMDSGEYYSLFETRRDRGRHIRRLFTISLFVAICFIWAFRLSHIPANGDNGKWAWLGLFAAELWFGLYWLFGQALRWNLVFRKTFNNKLSQRYESSLPRVDIFVFTADPIIEPPMMVINTILSVMTYDYPVEKLSVYLSDDAGSNITFYALLEASTFAKHWVPFCKKFKVEPRSPDAYFNTLISANPHDHNHAKDLASIKKLYEDMKRRIEDVVKLGGVPSEAHSKHNGFSQWDSYSSRHDHDTILQVD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3579 257 Pfam Cellulose synthase 108 256 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu6g3579 257 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 15 256 - -
Ssu6g3579 257 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN E1 15 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3579 Ssu-Chr6 79411888 79415273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3579 1 256 Glycosyltransferase AT1G55850 51.908 1.51e-83 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3579 - - gmx:112999362 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1098 9 42555890 42568563 Ssu6g3579 6 79411888 79415273 PCT