Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1057 ATGAATGTCCTGGTTCTAGGGCGCTTCCTCACTTCACCCTTATATAAGACTTCCCCTCTCACTCCCTCCCCAATCCAATTCACACCCATTTTTCTTCGCCCCCAAAAGCTTCGACCTTTGCTCGCAATTCaccctttccttttctctttctcttccacCATGGCCACTTGTGTGGATGCTCCAACCCCTCCTTCTCGCAAGCCAAACGCGCCCCAACCCGACGACCATTCCTTCAATTACATGAAATTCTGCAGACCCACTTTCTCCGATCGCGTCCCCTGCGTCCCCATTTGCAAGAACCGCGGCACGGCCTTCACACGTGTGGAGGAATATGACACACGTGTGAAGGAGGATGTTATTGACGAGGCTGTTGATCTATGGTTGAAGATTCAGGAAGAAGCAAGGCTAGATGTGGATCAAGAACCAATTCTATGCAGCTATTATTTCAGTTCCATTTTGTCTCACAAATCGTTAGAAAGTGCCTTGGCCAATCACCTCTCCACCAATTTGAGCAGTTTGAGCCTTCCAAGCAGCACCCTTTTTGATCTTTTCGTGGGTGTTTTGAATGATGGTGATGGAGGAGATATCATAGGTGCCGTGAAGGATGATTTGATAGCGGTTAAGGAGAGGGACCCTGCTTGCATAAGTTACGTGCATTGTTTGTTGAATTTCAAAGGGTTTCTGGCTTGCCAGGCTCATAGGATTGCTCACAAATTGTGGCTACAAGGGAGGAAGGTTTTGGCACTGTTGATTCAGAATAGGGTGTCTGAGGTTTTTGCCGTGGATATTCACCCTGGTGCCAAGATTGGACGTGGGATTTTGTTGGATCATGCAACTGGGCTTGTGGTGGGGGAGACCGCAGTTATTGGGAACAATGTGTCAATTTTGCATAATGTGACATTGGGAGGGACTGGCAAGGCGTGTGGGGATAGGCACCCCAAGATTGGTGATGGGGTGTTGATAGGTGCAGGGACTTGTATTTTGGGGAACATTAAGATTGGTGACGGGGCCAAGATTGGTGCTGGTTCTGTGGTGTTGAAGGAAGTGCCACCAAGGACTACTGCAGTTGGGAACCCGGCTAGGTTGGTTGGGGGGAAGGATAACCCTATTAGATTGGATAAGATGCCTAGTTTTACTATGGACCAAACTTCACATATTTCTGAGTGGTCTGATTATGTTATCTAG 1185 0.47 MNVLVLGRFLTSPLYKTSPLTPSPIQFTPIFLRPQKLRPLLAIHPFLFSFSSTMATCVDAPTPPSRKPNAPQPDDHSFNYMKFCRPTFSDRVPCVPICKNRGTAFTRVEEYDTRVKEDVIDEAVDLWLKIQEEARLDVDQEPILCSYYFSSILSHKSLESALANHLSTNLSSLSLPSSTLFDLFVGVLNDGDGGDIIGAVKDDLIAVKERDPACISYVHCLLNFKGFLACQAHRIAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGRGILLDHATGLVVGETAVIGNNVSILHNVTLGGTGKACGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKEVPPRTTAVGNPARLVGGKDNPIRLDKMPSFTMDQTSHISEWSDYVI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1057 394 Gene3D serine acetyltransferase, domain 1 111 261 IPR042122 -
Ssu9g1057 394 TIGRFAM cysE: serine O-acetyltransferase 200 361 IPR005881 GO:0005737|GO:0006535|GO:0009001
Ssu9g1057 394 SUPERFAMILY Trimeric LpxA-like enzymes 119 364 IPR011004 -
Ssu9g1057 394 PANTHER SERINE ACETYLTRANSFERASE 54 394 - -
Ssu9g1057 394 PANTHER SERINE ACETYLTRANSFERASE 54 394 - -
Ssu9g1057 394 Gene3D Hexapeptide repeat proteins 262 383 - -
Ssu9g1057 394 CDD LbH_SAT 259 359 IPR045304 -
Ssu9g1057 394 Pfam Bacterial transferase hexapeptide (six repeats) 312 346 IPR001451 -
Ssu9g1057 394 Pfam Serine acetyltransferase, N-terminal 126 232 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu9g1057 394 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 321 349 IPR018357 GO:0016740
Ssu9g1057 394 SMART SATase_N_2_a 126 232 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1057 Ssu-Chr9 41835276 41836460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1057 106 363 Miscellaneous Gene Families AT2G17640 53.668 8.72e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1057 K00640 - gmx:606507 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1057 9 41835276 41836460 Ssu9g1057 9 41835276 41836460 ECH
Ssu9g1057 9 41835276 41836460 Ssu6g3558 6 79178362 79179429 PCT