Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3558 ATGATGCGAAGGCACTCCCTTGTGACTCCATCACCAAAACAAGTGTCCCTCCTCTTTGTTGGCCACCCAACTCATGCTCACACCTTCCCTTCCAGCTCCACCCCTTGTAACTCATTCTCCCAAACCCATCATCACTGGTGGGGCTACCCCAAAACCTTCAAACCCAGTTTCACTCCCTCGTTGCCCATTTGCAAGCACGGTGTCAACACCTTGCACACCAGTTCCACTGTAGAACAAATTGAAGTGGACGAGGTCGAAGGCGACGTGTGGTTGAAGATGCAAGAAGAAGCCAGGCTCGATGTCACTGTAGAACCTATTTTGTCCGGTTACTACAGCACTTCCATTCTGTCTCACAAGTCATTGCAAACCGCGTTGGCCAATCACCTTGCCGTCAAACTCAGCAGTGCAAGCCTTCCAAGTGGCACCCTTTCTGGTCTTTTTGCGACGGTTTTGGAGGCTGACCACGCCATCGTGGATGCTGTGAAGAGTGATCTGAGGGCAGTGAAGGAGAGAGACCCTGCTTGCGTAAGCCACGTGCACTGCTTCTTGAATTTCAAAGGCTTTCTGGCGTGCCAGGCTCACAGGGTGGCTCACAAGTTGTGGCTACAGGGAAGGAAGGTTGTGGCTGTCGTGATTCAGAACCGCGTTTCTGAGGTTTTCGCGGTGGATATTCATCCGGCGGCTAAGATCGGAAGTGGGATTTTGCTGGATCACGCAACTGGGATTGTGGTGGGAGAGACGGCTATGATAGGGAACAATGTGTCGATTTTGCATAGTGTGACTTTGGGAGGCACTGGTAAGGTTTCGGGGGACAGGCACCCGAAGATCGGTGATGGGGTGCTCATAGGTGCAGGGACTTGTATCTTGGGGAATATTAAAGTCGGTGATGGGGCTAAGATTGGTGCTGGGTCAGTGGTCATCAAGGATGTGCCTCCAAGAACTACTGTTGTTGGGAACCCGGCTAGGCTGGTAGGAGGGAAGAACAACCCTGTTAAGTTGGATAAGATTCCTAGCTTCACCATGGACCATACTTCACATATTTCTGACTTTTATGATTATTGTGTTTAG 1068 0.5094 MMRRHSLVTPSPKQVSLLFVGHPTHAHTFPSSSTPCNSFSQTHHHWWGYPKTFKPSFTPSLPICKHGVNTLHTSSTVEQIEVDEVEGDVWLKMQEEARLDVTVEPILSGYYSTSILSHKSLQTALANHLAVKLSSASLPSGTLSGLFATVLEADHAIVDAVKSDLRAVKERDPACVSHVHCFLNFKGFLACQAHRVAHKLWLQGRKVVAVVIQNRVSEVFAVDIHPAAKIGSGILLDHATGIVVGETAMIGNNVSILHSVTLGGTGKVSGDRHPKIGDGVLIGAGTCILGNIKVGDGAKIGAGSVVIKDVPPRTTVVGNPARLVGGKNNPVKLDKIPSFTMDHTSHISDFYDYCV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3558 355 Pfam Bacterial transferase hexapeptide (six repeats) 273 307 IPR001451 -
Ssu6g3558 355 TIGRFAM cysE: serine O-acetyltransferase 161 322 IPR005881 GO:0005737|GO:0006535|GO:0009001
Ssu6g3558 355 PANTHER SERINE ACETYLTRANSFERASE 51 354 - -
Ssu6g3558 355 SUPERFAMILY Trimeric LpxA-like enzymes 88 324 IPR011004 -
Ssu6g3558 355 SMART SATase_N_2_a 89 193 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu6g3558 355 Gene3D serine acetyltransferase, domain 1 71 222 IPR042122 -
Ssu6g3558 355 Pfam Serine acetyltransferase, N-terminal 89 193 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu6g3558 355 Gene3D Hexapeptide repeat proteins 223 343 - -
Ssu6g3558 355 PANTHER SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC 51 354 - -
Ssu6g3558 355 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 282 310 IPR018357 GO:0016740
Ssu6g3558 355 CDD LbH_SAT 220 320 IPR045304 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3558 Ssu-Chr6 79178362 79179429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3558 89 351 Miscellaneous Gene Families AT2G17640 50.929 7.78e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3558 K00640 - gmx:100820316 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3558 6 79178362 79179429 Ssu6g3558 6 79178362 79179429 ECH
Ssu9g1057 9 41835276 41836460 Ssu6g3558 6 79178362 79179429 PCT