Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1041 ATGGATATTTCGGAGTACACAAGGATTGTTTTTGATAAACTTCAGAGATTTGAGCCTGAACATGCTACAAAGATCATAGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCCTCACTCCCAGACCATTTAATTCGTGACGTGGCATTTAAGGCCAGAACCGAGCTTCAAAGGTTGGCTGCTAGATCAGCCATTCATCCAATTTCACTTCCCATTAACTCTCAACAAGGTCTAAGCCATTTGTCAGTATCAGTAGTCTCCCCCAGCACTCCTACTTCAGCAACAAGCTTCCAGGTTCAATCTCCCTATTGGGAACCTCAGTCTGTTAGCAATACCAATGCAGAATTTATGTCAATAGGTTATTTGGATTCTATCTCAGAACTTCAAAAGCAGACTCCTATGTTCAGTATAGAGAACCATATAGATAGTGTACATTCTGGGACTGCTGGGATTACCAATGATTACTATGGCTTAGATGCTTTGTCAGCTGGTAATTTGGGTGGAAAAGCAGGTAGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGATTTTGTAAGCATGGAAACAGCTGTAGATACTATCATGGACAAGGTGTCCCTGATATATTCTCTCACGTGTATGGAAATGATAGTTTTAATGATGATCAGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCGGAAATTGTTGAACtcctaaaactaaaaaaggGCGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTATGATAGGTATAAAAAGGTGCTGCAGGCAGACGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTGGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGGCAAATACATCAGTGCATCACGTCAAATATATCTGACATTTCCGGCTGACAGCACTTTTAGCGAGGGTGATGTCTCAAACTACTTTAGCACTTTCGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAaactgttaaaataattttggataaGGGAAATCCCCATTACGTTTGTGAATCTCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGGTCAGGAAGCACTCAGATAAAATTGAGCACCCAGTTTATTATTCGCCACACTATGTAGACATGGACACTGAACCTACCTCAATTCCAAGAAGTTGCAGGAACCCTCGATTTCTTAGGAGGCTGCTCATTGAACAGCAAGAGGAGGCGGCCCTTGAATTTCAGAGAAGACGGTTCGCAGAGCTGCAACTGGCCCAAAAATCATTTCCCACTTCACCCCATTTAGGCTTCAACATGGATGGATTAAAAGTTTCAGATGATTATTTCAATATCCAGTCTGCAGAATCTCACAGTCATGCCCCAAGTGACAAAGCCAGATATAGAGATAACAATTACACTGATGAAGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG 1659 0.4147 MDISEYTRIVFDKLQRFEPEHATKIIGYLLLQDHGEQDMVKLASLPDHLIRDVAFKARTELQRLAARSAIHPISLPINSQQGLSHLSVSVVSPSTPTSATSFQVQSPYWEPQSVSNTNAEFMSIGYLDSISELQKQTPMFSIENHIDSVHSGTAGITNDYYGLDALSAGNLGGKAGRRFEFPVKTCHYFNKGFCKHGNSCRYYHGQGVPDIFSHVYGNDSFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKIILDKGNPHYVCESRVLVKPYKEKPKLMVRKHSDKIEHPVYYSPHYVDMDTEPTSIPRSCRNPRFLRRLLIEQQEEAALEFQRRRFAELQLAQKSFPTSPHLGFNMDGLKVSDDYFNIQSAESHSHAPSDKARYRDNNYTDEDSNQGLNLPDSPFAFPVDSGISAVM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1041 552 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 552 - -
Ssu9g1041 552 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 206 IPR000571 GO:0046872
Ssu9g1041 552 MobiDBLite consensus disorder prediction 511 525 - -
Ssu9g1041 552 SUPERFAMILY RNA-binding domain, RBD 344 424 IPR035979 GO:0003676
Ssu9g1041 552 SMART rrm1_1 334 404 IPR000504 GO:0003723
Ssu9g1041 552 Gene3D - 337 411 IPR012677 -
Ssu9g1041 552 ProSiteProfiles OST-type HTH domain profile. 231 314 IPR025605 -
Ssu9g1041 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 409 IPR000504 GO:0003723
Ssu9g1041 552 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872
Ssu9g1041 552 MobiDBLite consensus disorder prediction 506 538 - -
Ssu9g1041 552 Pfam OST-HTH/LOTUS domain 231 310 IPR025605 -
Ssu9g1041 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 390 IPR000504 GO:0003723
Ssu9g1041 552 Gene3D - 180 238 - -
Ssu9g1041 552 CDD RRM_AtC3H46_like 335 404 IPR034365 -
Ssu9g1041 552 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1041 Ssu-Chr9 41282615 41285578 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1041 - - gmx:100806206 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1041 9 41282615 41285578 Ssu9g1041 9 41282615 41285578 ECH
Ssu9g1041 9 41282615 41285578 Ssu6g3549 6 78840668 78845416 PCT