Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3549 ATGGATATTTCTGACTACACAAGGATTGTCTTTGATAAAATTCAGAAATTTGAGCCAGAGCATGCTACAAAGATAATTGGCTATCTCCTTTTGCAAGACCATGGAgaacaagaaatggctagattGGCTTCATGCCCTGACTATTACATCTGTGATGTGGCACTTAAGGCCAAAAAGGATCTTCGAAGGTTGGCTGCTAAACCAGATATGCCCCCAATTTCATCCACTGTTAACTCTCAACAAGGCTTAAGCCATCTATCAGTAATCTCCCCTAGAACTCCTAATTCACCAAACTTTCAGGTTCCTCCTCCTTACTGGGATCCACAATCTGCTGGCAGTATCAATCCAGACTTTATGGCAATGAATTACTTGGACTCTATTGCAGAACTTCAAAAGCAGACACAATTACTCAGTTTGGAGAATCGTATAAATACGGGGACTGGAGGGGTTGCCAATGATTACTATGGCTTAGATGCTTCTGCTGCCAATTTGGATGGAAAAGCTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATCTGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGTCCCTGAGAATTTCTCTCATATGTATGGAAATGATGCTATTAGTGAGGATCAGGTGATTTCCCCAGGGTCATTAGCACAGTTAGAGTCAGAAATTATTGAGCTCCTAAGGTCAAGAGGCAGTCCAATGTCAATTGCTTCCCTGCCGATGGCATactatgataaatataaaaaggtacTCCAAGCAGATGGTTATTTAACTGAGAGCCAGAGACATGGGAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAATAGTATTCGGCTAATAGGCAGACCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCTACACAAATGCAAAAGGGCGATTTTGCTCGAAATATCAGTGCATCACGACAAATATATCTGACGTTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGACCTGTTGCAGATGTCAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCTGAAACTGTCAAAACTGTTTTGGAAAAGGGGAATCCCCATTGTGTTCGGGGTTCTCGGGTGCTTGTGAAACCTTACCGGGAGAAAGCAAAGGTTAATGAAAGGAAGTACACAGATAGATTTGAGCACCCTGTTTGTTATTCACCACACTATGTAGATACGGATTCTGAACTTAACTCAATTCCAAGAAGTTATGGGAACCTTAGATCCATTAGGAGACAGCTAATTGAAGAGCAAGATCAATCCCTGGAACTTCAGAGGAGAAGTCTTGCACAGCTGCACTTTGCCCAAAAACCTGTCTCTAGTTCACCTCATTTTGGTTTCTCCATGGATGAGTCAAGAATTTCAGATGATCACTTCAATTTCCAGCCAGCAGAAGAATCTTTCTGTTTTCCACTGCATGATAAATCCAGGCATACAGACATCAATTTCCCTGATGAGGACAGCAATCAAGGACTCAATCTCCCAGACAGTCCATTCGCATTTCCAATAGATAGTGGGATGTAA 1626 0.4121 MDISDYTRIVFDKIQKFEPEHATKIIGYLLLQDHGEQEMARLASCPDYYICDVALKAKKDLRRLAAKPDMPPISSTVNSQQGLSHLSVISPRTPNSPNFQVPPPYWDPQSAGSINPDFMAMNYLDSIAELQKQTQLLSLENRINTGTGGVANDYYGLDASAANLDGKAGRRFSEFPMKICHYFNKGFCKHGTSCRFYHGQVVPENFSHMYGNDAISEDQVISPGSLAQLESEIIELLRSRGSPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIGRPHGQHSVVLAEDAPTQMQKGDFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLEKGNPHCVRGSRVLVKPYREKAKVNERKYTDRFEHPVCYSPHYVDTDSELNSIPRSYGNLRSIRRQLIEEQDQSLELQRRSLAQLHFAQKPVSSSPHFGFSMDESRISDDHFNFQPAEESFCFPLHDKSRHTDINFPDEDSNQGLNLPDSPFAFPIDSGM 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3549 541 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 401 IPR000504 GO:0003723
Ssu6g3549 541 SMART rrm1_1 327 397 IPR000504 GO:0003723
Ssu6g3549 541 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 393 IPR000504 GO:0003723
Ssu6g3549 541 SUPERFAMILY CCCH zinc finger 176 199 IPR036855 GO:0046872
Ssu6g3549 541 MobiDBLite consensus disorder prediction 516 541 - -
Ssu6g3549 541 Gene3D - 326 407 IPR012677 -
Ssu6g3549 541 ProSiteProfiles OST-type HTH domain profile. 225 307 IPR025605 -
Ssu6g3549 541 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 540 - -
Ssu6g3549 541 Coils Coil 441 461 - -
Ssu6g3549 541 CDD RRM_AtC3H46_like 328 397 IPR034365 -
Ssu6g3549 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 200 IPR000571 GO:0046872
Ssu6g3549 541 ProSiteProfiles Zinc finger C3H1-type profile. 174 201 IPR000571 GO:0046872
Ssu6g3549 541 SMART c3hfinal6 174 200 IPR000571 GO:0046872
Ssu6g3549 541 Pfam OST-HTH/LOTUS domain 225 303 IPR025605 -
Ssu6g3549 541 Gene3D - 172 233 - -
Ssu6g3549 541 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 540 - -
Ssu6g3549 541 SUPERFAMILY RNA-binding domain, RBD 337 446 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3549 Ssu-Chr6 78840668 78845416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3549 - - gmx:100818984 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3549 6 78840668 78845416 Ssu6g3549 6 78840668 78845416 ECH
Ssu9g1041 9 41282615 41285578 Ssu6g3549 6 78840668 78845416 PCT