Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1035 ATGGATTCCCCACAGTCTGTTGTGTCACCCTTCAGGAGCTCAGTGTTGGGTGAGGGTGAGAAGCACAAGTCTGATGTTTTCTCGGGAAACTCTAGTCCATTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGCTGTGATGTCAAATGCAGAGGAGTTTCTTGGAGTGCTTGATGTTTACATACACCAAGCAAGGGACATTCATAACATTTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACCAGTAACCCTGAGAACACTGTGTCTACCAAAACTATCAATGGAGGGGGAAGGAACCCTGTGTTTAATGAGAATCTTCGTGTTGATGTTAGGACTGTTGATTCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTGGTGCCTTTGTCTGAAGTGCTGGTCCAGAATGGGAAACTTGAGAAAGAGTTCTCTCTTTCGTCAACTGATCTATTCCATTCTCCTGCAGGTTTTGTTCATTTGTCACTTTCTTACACTGGTGCTTCACCTGATGTTATGGCAATTTCTGCAATGCCAACCAAGGTGGCCACAGATGCCACTGTGCAGGATCCTGAAACTTCTGAGTCACTGGCAAGGGATCTAGACAAAATCGAGTTCCCGGATCCGAAGATTGTGAATGAAGACCACTTGATGGTTTCAGAATACTTTGGCATTCCATGTGAGGAGACTCAGTGTTCTGATAGCTTGGCTACTTCTGATGCCGAAAATCACAGTTCCGAAGCCGGTGTTCGGCTTGTGGAAAGATTCTCAGCTTGCAGTGTTGAGTCTGTTCAGCCTCCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCTCCTTCTGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCCAAGTCTCCCATTCAGGAGCAAGTTTCAGGCACCAAAGAGGACAAGAATGTGGATGCCAAAGATGGTGAGAGTGATTCCTCAAGTGGGGTTCCTAGTGACTCATTCCCTAAGCCTGTTGTGAGTGTGAACATTGAGCCTGAGCCAAAGGTGGTGCAGCAGGATATCGTAGACATGTACATGAAAAGCATGCAGCAATTCACTGAGTCATTAGCAAAAATGAAGCTCCCTATGGACTTTGAAAGTGAACCAACTAGTTCAGGAAATTCAACCACTGAGCAGAAACTACAGCCATCAAAGAGCAATAATTCCCGCGTGTTTTATGGCAGCAGAGCTTTCTTCTGA 1287 0.4538 MDSPQSVVSPFRSSVLGEGEKHKSDVFSGNSSPLSKDIEVNGKEAVMSNAEEFLGVLDVYIHQARDIHNICIYHKQDVYAKICLTSNPENTVSTKTINGGGRNPVFNENLRVDVRTVDSSLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPAGFVHLSLSYTGASPDVMAISAMPTKVATDATVQDPETSESLARDLDKIEFPDPKIVNEDHLMVSEYFGIPCEETQCSDSLATSDAENHSSEAGVRLVERFSACSVESVQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPIQEQVSGTKEDKNVDAKDGESDSSSGVPSDSFPKPVVSVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1035 428 Gene3D C2 domain 51 211 IPR035892 -
Ssu9g1035 428 MobiDBLite consensus disorder prediction 280 356 - -
Ssu9g1035 428 CDD C2 57 163 - -
Ssu9g1035 428 MobiDBLite consensus disorder prediction 396 422 - -
Ssu9g1035 428 MobiDBLite consensus disorder prediction 284 325 - -
Ssu9g1035 428 Pfam C2 domain 55 162 IPR000008 -
Ssu9g1035 428 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Ssu9g1035 428 MobiDBLite consensus disorder prediction 1 32 - -
Ssu9g1035 428 PANTHER EXPRESSED PROTEIN 1 428 - -
Ssu9g1035 428 SMART C2_3c 56 159 IPR000008 -
Ssu9g1035 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 185 IPR035892 -
Ssu9g1035 428 MobiDBLite consensus disorder prediction 392 428 - -
Ssu9g1035 428 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1035 Ssu-Chr9 41139610 41140896 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1035 - - gmx:100796499 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1035 9 41139610 41140896 Ssu9g1035 9 41139610 41140896 ECH
Ssu9g1035 9 41139610 41140896 Ssu6g3538 6 78750745 78752028 PCT