Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3538 ATGGAATCCCCACAATCAGTTGTGTCACCATTCAAGAGCTCTCTCTTGGGTGAAGCTGAGAAGTTTAGGTCTGATAATTTCACGCAAAGCTGGGGTCCCTTGTCTAAGGACATTGAAGTCAATGGAAAGGAAGTTGTCGTGACTAATCCGGAGGAATTCATTGGCTTTGTTGATGTTTACATTCATGAGGCTAGGGACATTCAGAACATCTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCTTGACTAGTAATCCTGAGAATACTGTCTCTACCAAGACTATCAATGGAGGAGGAAGGAACCCCATCTTTAATGAGAATCTTCGTCTAAACGTTAGGACTGTTGATTCGGCTGTTAAATGTGAAATTTGGATGCTGAGCAGGGTGAAGAATTATCTTGAAGATCAGTTGCTTGGTTTTGCTTTGGTGCCTTTGTCTGAAGTACTGGTGAAGGATGGCAAACTAGAGAAAGAGTTCTCTCTTTCCTCAACTGATCTTTTCCATTCCCCAGCAGGTTTTGTTCAATTGTCTGTCGCTTACACTGGCGCTTCGCCTGATGTTATGGCAATTTCTGCAATGCCTACTGAGTTGGCCGCAAATGGCACTGAGAAGGACTCTGAATCATGCGAGTCGCTGGTCAGAGATTTAGACAAAATCGAATTCCCGGATCCAAAAATTGTAAATGAAGACCACTTGATGGTTTCGGAATATTTTGGCATTCCATGTGATGAGAGCCAGTGTTCTGGTAGCTTGACCACTACTGATACTGAAAATCTGAGTTCCGAAGCAGGTGTTCAGCTAGTGGAAAGCTTCTCAGCATGCAGTGTTGAATCTGTCCAACCTCCTAAGGTTGATTCTCCACCTAGCAGTGTGTCAACCAACGGGGTTTCGTCTCCTTCAGCAGCCGCAAGCTCAGACTCATCTGATGTTGCTGCATCCAAGTCTCCCAATCAGGAGCAAGTTTCAGGCACCAAAGAGAAAAATGGGCATGTCAAAGATGGTGAGAGTGATTCCTCAAATGGGGTGCTGAATGAGTCATTCCCTAAGCCTGTTGTGACAGTTAACATTGAGCCGGAGCCGAATGTGGTGCAACAGGATATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACCGAGTCATTGGCAAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAAGCTCTGAACAGAAGTTACAGACACCAAAGAGCACTAACTCCCGCGTGTTTTATGGGAGCAGGGCTTTCTTCTGA 1284 0.4447 MESPQSVVSPFKSSLLGEAEKFRSDNFTQSWGPLSKDIEVNGKEVVVTNPEEFIGFVDVYIHEARDIQNICIYHKQDVYAKICLTSNPENTVSTKTINGGGRNPIFNENLRLNVRTVDSAVKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVKDGKLEKEFSLSSTDLFHSPAGFVQLSVAYTGASPDVMAISAMPTELAANGTEKDSESCESLVRDLDKIEFPDPKIVNEDHLMVSEYFGIPCDESQCSGSLTTTDTENLSSEAGVQLVESFSACSVESVQPPKVDSPPSSVSTNGVSSPSAAASSDSSDVAASKSPNQEQVSGTKEKNGHVKDGESDSSNGVLNESFPKPVVTVNIEPEPNVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQKLQTPKSTNSRVFYGSRAFF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3538 427 PANTHER EXPRESSED PROTEIN 1 427 - -
Ssu6g3538 427 MobiDBLite consensus disorder prediction 391 427 - -
Ssu6g3538 427 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 427 - -
Ssu6g3538 427 CDD C2 57 163 - -
Ssu6g3538 427 Gene3D C2 domain 52 207 IPR035892 -
Ssu6g3538 427 Pfam C2 domain 57 161 IPR000008 -
Ssu6g3538 427 ProSiteProfiles C2 domain profile. 30 161 IPR000008 -
Ssu6g3538 427 MobiDBLite consensus disorder prediction 280 326 - -
Ssu6g3538 427 MobiDBLite consensus disorder prediction 280 348 - -
Ssu6g3538 427 MobiDBLite consensus disorder prediction 395 421 - -
Ssu6g3538 427 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 51 184 IPR035892 -
Ssu6g3538 427 SMART C2_3c 56 159 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3538 Ssu-Chr6 78750745 78752028 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3538 - - gmx:100781587 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3538 6 78750745 78752028 Ssu6g3538 6 78750745 78752028 ECH
Ssu9g1035 9 41139610 41140896 Ssu6g3538 6 78750745 78752028 PCT