Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0963 ATGGAGACTCACGCGAATTCCTTCGTGTCCAAAGCGCGAACCGCGTTCCATTCCGCTGCCGCGAAAGCGGAGCGAGTTCTCATGGACTTCAAGATCGATCTGGGTGAGTGCGCGTCTTTCGTTCTCGTTGCGTGGAAATGCGATTCTGAGAAGCAATCGCACGACGATTGGGGGAGGCAGCGGGGAGATGAATCTGCTCGGAGAGAGAACGAATCAAAGTTGCTCAATGAACTGAAGCATATAAAGTGGAGACCTCCGCATATAGGATTAAAGCAGGGCTGGCAAGATAGAATTAACAACATGCGAAAAGGGAGAAAAGAGGTCGAAGTAACGGATATAGTTGGCGATGTAAACATGACATCCGTTCCattttatgatgaaaatttGTACATTCTCAATGTGAGAAATGATCTTGATGCCAAGgCTTCAGAAGCAATTCCTTCGGTTGAAGGCTTAACTGCTGCGACCAAACACCCCATTCCTCCATCGTCTGTCCTGAAGCAGTTGGCTATAGCTGTTAAGGCTGGAAGGAAAGCAAACTCAATGAAAGATTTTGTAGCTTCATCGAGAGGTTCGTCACCTGCTAGAGAGAGGGCAGGCTTAAGTCTCTCTTCAGTGAAGGCTTTAGTGTTGCGTGAAAAGGAGGACAAACTTACCTTTGAGTTTAGTAGCAATGAAAAAgttgtatatttgattaattcATTGTTTGATCCAGAGGGAGAGTTCCTTAGAAGGAAGATCAACTCTGGTCCAGAGGAAACTTCCATATCATCTTTGCCAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTAGTTGTAAAGCTAGCTGAATTAATCGGAAATTTCAAGACACTTCGAGAAATGGCTCTTTTTTGGTGCAGGGTTGTTGCTGAACTGAGAAAACATTGGTCAGAAGAAAAACATTTACCTGGAGTCCCCCCAGATGACATTCCAGATCTGAAGTCATGTCTTCTGTTTCAACAATTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGCGTCATATTGTTGCCACTGAATCTCTAGACTCTATGATGATGGAAGCCAATTCAAATACATTAGAATCAGTGAACTACACAGACAAAACTCCTGCAAACCCGTTATTATATGCAAGATTAAGAACTGGAGAGCTTGTTCTTCGACTTGGTGCTGATTGCCCATATGGAGATCTGACGTTATTGGAAACTGGCGAGCCTGCATACTCTCCTGTCACCCAGGAGGGACCCCTTCTTACAGAAGATCTGATCAAAGAGACGGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAACTCCTCGCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGACAGAAAGTGAGGGAAGTACTGAGGATAGAGATTCTTTTTATGGTGGTGAGTCAATGTCTACCAGAGGTCAACTAAGTCTGCGAATGCAAAAAGAAGGTAATTTGTGGCGTGAATTGTGGGAAACATCTAAACCTGTTCCAGCTGTTAAACAGGCACCTCTCTACGATGAGGATTTGGCAGTGGAGGGCATTCTAGATGCATTTGAGGACATCCAGCCTTCGGAGCTTTTTGGACAGCTGTTTGTTTCTCTTCTCGGTTTAGGGTTTGCTATTGCTGAAACTACGCTGTCTGGTGACATTAACATCTCAAAGTTGTTTAATGACTGCAAGGAGTACATAGTTAACACTTGTCAAAGTGACAGATTCAATGAGAAAGTCGATGAACTTGTTCAGATGTATGAAACGGTGGAGACAATGTTGCGGAATCCAGACGAGGCACTGAAAATGATGAAGCACATGGAAGAATCAACTATGACTACTGGTGAACCAAAGCGCCGGTTGTCTCCTGGTGAACCAAAGCACCGGTTTAAGAGACTTAGCCATATCTTTGGTGGCAAAGATAAATTATTGACAAGGCCTGTCTGGAAAGATGAGGTAAACGATGAAGAAAAGCCGATTCGACAATCTTTCTCGAGTTTCCTTGATAGCAAGTCatctttattttcaaagaagCCTCCTAAGCCTGGAAACCTGTACCCTTCTGAGCAACCTCTCTCTCTGGAAAGTGATTGGACAGTTGTATAG 2157 0.4363 METHANSFVSKARTAFHSAAAKAERVLMDFKIDLGECASFVLVAWKCDSEKQSHDDWGRQRGDESARRENESKLLNELKHIKWRPPHIGLKQGWQDRINNMRKGRKEVEVTDIVGDVNMTSVPFYDENLYILNVRNDLDAKASEAIPSVEGLTAATKHPIPPSSVLKQLAIAVKAGRKANSMKDFVASSRGSSPARERAGLSLSSVKALVLREKEDKLTFEFSSNEKVVYLINSLFDPEGEFLRRKINSGPEETSISSLPRDIHGAPPESLVVKLAELIGNFKTLREMALFWCRVVAELRKHWSEEKHLPGVPPDDIPDLKSCLLFQQFQVINCCISRKRRHIVATESLDSMMMEANSNTLESVNYTDKTPANPLLYARLRTGELVLRLGADCPYGDLTLLETGEPAYSPVTQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLADMQAFKAANPGCILEDFVRWYSPPDWTESEGSTEDRDSFYGGESMSTRGQLSLRMQKEGNLWRELWETSKPVPAVKQAPLYDEDLAVEGILDAFEDIQPSELFGQLFVSLLGLGFAIAETTLSGDINISKLFNDCKEYIVNTCQSDRFNEKVDELVQMYETVETMLRNPDEALKMMKHMEESTMTTGEPKRRLSPGEPKHRFKRLSHIFGGKDKLLTRPVWKDEVNDEEKPIRQSFSSFLDSKSSLFSKKPPKPGNLYPSEQPLSLESDWTVV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0963 718 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 718 IPR045700 GO:0005096|GO:0043547
Ssu9g0963 718 MobiDBLite consensus disorder prediction 688 718 - -
Ssu9g0963 718 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 718 - -
Ssu9g0963 718 Pfam Rab3 GTPase-activating protein catalytic subunit 388 540 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0963 Ssu-Chr9 39503624 39512600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0963 K18270 - gmx:100800515 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0963 9 39503624 39512600 Ssu9g0963 9 39503624 39512600 ECH
Ssu9g0963 9 39503624 39512600 Ssu6g3483 6 77719255 77725185 PCT