Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0453 ATGATGGACAAGTTGAGTCAGTATGTGCGGGTGTTCAATCACTTTGATGAGAATGGAGATGGCAAGATATCACCGTCGGAGTTGCGGCAATGCGTGGGGGCGATCGGCGACGAGTTGTTGCGGGAGGAGGCGGAGGCCGTGGTGGAGCTTCTAGACTCAGACAAGGATGGGTTAGTGGGGTTGGATGATTTTGTGAGGTTTGTGGAGGGaggggaagaggaagagaaagtgaaagaCCTAAGAGAGGCTTTTAAGATGTATGAAATGGAGGGGTGTGGTTGCATCACGCCAAAGAGTCTCAAGAGAATGCTCGGGAGATTGGGCGAGTGCAAGAGTATAGATGAGTGTCAAGCTATGATCGCTAGATTTGACCTTGATGGGGATGGGGTGCTCAGTTTTGATGAATTTAGGGTCATGATGTTGTAA 426 0.4671 MMDKLSQYVRVFNHFDENGDGKISPSELRQCVGAIGDELLREEAEAVVELLDSDKDGLVGLDDFVRFVEGGEEEEKVKDLREAFKMYEMEGCGCITPKSLKRMLGRLGECKSIDECQAMIARFDLDGDGVLSFDEFRVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0453 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Ssu9g0453 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 141 - -
Ssu9g0453 141 Pfam EF-hand domain pair 93 140 IPR002048 GO:0005509
Ssu9g0453 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Ssu9g0453 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Ssu9g0453 141 SMART efh_1 115 141 IPR002048 GO:0005509
Ssu9g0453 141 SMART efh_1 7 35 IPR002048 GO:0005509
Ssu9g0453 141 SMART efh_1 79 107 IPR002048 GO:0005509
Ssu9g0453 141 SMART efh_1 43 71 IPR002048 GO:0005509
Ssu9g0453 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Ssu9g0453 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Ssu9g0453 141 CDD EFh 10 67 IPR002048 GO:0005509
Ssu9g0453 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Ssu9g0453 141 Pfam EF-hand domain pair 10 68 IPR002048 GO:0005509
Ssu9g0453 141 CDD EFh 79 140 IPR002048 GO:0005509
Ssu9g0453 141 Gene3D - 1 69 - -
Ssu9g0453 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Ssu9g0453 141 Gene3D - 70 141 - -
Ssu9g0453 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 141 - -
Ssu9g0453 141 SUPERFAMILY EF-hand 4 140 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0453 Ssu-Chr9 22666797 22667222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0453 3 140 EF-hand Containing Proteins AT1G76650 47.826 1.14e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0453 K13448 - qsu:111991949 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1957 4 37166799 37167221 Ssu9g0453 9 22666797 22667222 PCT