Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1957 ATGGACAAGCTAAGCCAGTATGAACGTGTGTTCAATCACTTTGATGAAAACGGAGACGGCAAGATATCGCCGTCGGAGCTGCGGCAATGCGTGGAGGCCATGCGCGAGGAGTTGTCGGCGGAGGACGCTGAGGCGGCGGTGGCATTGCTCGACGCAGACGGTGATGGGTTGGTGGGGTTGGATGATTTTGTGAGGTTCATGGAGGAAGGGAAAGAGGAAGACAAAGAGAATGACCTAAAGGAGGCTTTCAAGATGTATGAGATGGATGGGAGTGGTTGCATCACACCGAGGAGTCTTAAAAGGATGCTTAGTAGGTTAGGTGAATCTAGGAGTTTAGATGAGTGTAAAGTTATGATAGCTAGATTTGATCTTGACGGAGATGGGGTACTCACGTTCGATGAATTTAAGGTCATGATGttgtaa 423 0.4846 MDKLSQYERVFNHFDENGDGKISPSELRQCVEAMREELSAEDAEAAVALLDADGDGLVGLDDFVRFMEEGKEEDKENDLKEAFKMYEMDGSGCITPRSLKRMLSRLGESRSLDECKVMIARFDLDGDGVLTFDEFKVMML 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1957 140 CDD EFh 78 139 IPR002048 GO:0005509
Ssu4g1957 140 CDD EFh 6 67 IPR002048 GO:0005509
Ssu4g1957 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Ssu4g1957 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Ssu4g1957 140 SMART efh_1 42 70 IPR002048 GO:0005509
Ssu4g1957 140 SMART efh_1 114 140 IPR002048 GO:0005509
Ssu4g1957 140 SMART efh_1 6 34 IPR002048 GO:0005509
Ssu4g1957 140 SMART efh_1 78 106 IPR002048 GO:0005509
Ssu4g1957 140 Gene3D - 72 140 - -
Ssu4g1957 140 SUPERFAMILY EF-hand 4 140 IPR011992 -
Ssu4g1957 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Ssu4g1957 140 Pfam EF-hand domain pair 76 139 IPR002048 GO:0005509
Ssu4g1957 140 Pfam EF-hand domain pair 6 68 IPR002048 GO:0005509
Ssu4g1957 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Ssu4g1957 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Ssu4g1957 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Ssu4g1957 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Ssu4g1957 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Ssu4g1957 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Ssu4g1957 140 Gene3D - 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1957 Ssu-Chr4 37166799 37167221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1957 2 139 EF-hand Containing Proteins AT1G76650 51.449 2.53e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1957 K13448 - gmx:100783575 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1957 4 37166799 37167221 Ssu4g1957 4 37166799 37167221 ECH
Ssu4g1957 4 37166799 37167221 Ssu9g0453 9 22666797 22667222 PCT