Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0443 ATGGCTGCCTCATCCACCATCAACAActtcctctctttcttcttaCCCACAAAAGCGCCACAGCCACATCCGCCGCCGCCACTCCAGTTCAACCCCGGCACTCCCTTGCCTTCTCAGACCCACAAACCCTCGCAGCCCCTAATTGCCGTGTACGacccttcttcctcttcttcttcttctgagtTGTCCTCTGTGATATGCCCCTCTCTGGCGTACTCGAACACGCTCTTCTTCCGATCGCCGTACAACGTTCAGGTGGTGGTGGGCGAGGACGAGCCCGAGGAGCGGCTCCTCAACAGGTTCCGCAGAGAGGTGCTGAAGGCTGGCGTCATTCAAGAGTGTAGGAGGAGACGGTACTTCGAGAacaaacaagaagagaaaaaacgCAAGTCGCGCGAAGCTGCCAAACGTAACCGCAGAAGGCGGCCCATGCCAAACACTGTAGCACAGAAAAAGCAGGATGTCCCAGCAACCAAGAGGGAAGAGGATGAGGATAATTGGGATCTACCTGAAGGAGACACTCTGTAG 528 0.4981 MAASSTINNFLSFFLPTKAPQPHPPPPLQFNPGTPLPSQTHKPSQPLIAVYDPSSSSSSSELSSVICPSLAYSNTLFFRSPYNVQVVVGEDEPEERLLNRFRREVLKAGVIQECRRRRYFENKQEEKKRKSREAAKRNRRRRPMPNTVAQKKQDVPATKREEDEDNWDLPEGDTL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0443 175 MobiDBLite consensus disorder prediction 18 33 - -
Ssu9g0443 175 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 30 173 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 PRINTS Ribosomal protein S21 family signature 87 95 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 PRINTS Ribosomal protein S21 family signature 107 117 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 PRINTS Ribosomal protein S21 family signature 119 129 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 PRINTS Ribosomal protein S21 family signature 95 104 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 TIGRFAM S21p: ribosomal protein bS21 84 141 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 MobiDBLite consensus disorder prediction 16 44 - -
Ssu9g0443 175 MobiDBLite consensus disorder prediction 122 175 - -
Ssu9g0443 175 Pfam Ribosomal protein S21 85 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu9g0443 175 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 30 173 - -
Ssu9g0443 175 Gene3D Ribosomal protein S8 98 136 IPR038380 -
Ssu9g0443 175 Hamap 30S ribosomal protein S21 [rpsU]. 83 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0443 Ssu-Chr9 22409231 22415824 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0443 - - vra:106765493 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1942 4 36903384 36904990 Ssu9g0443 9 22409231 22415824 PCT