Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1942 ATGAACCCGTCTCTTGCGCACGCCAACACGCTCTTCTTCCGGTCGGCGTACAACGTGCAGGTGGCGGTGGACGAGAACGAGCCCGAGGAGAGGCTGCTCAACCGGTTCCGAAGAGAGGTCATGAGAGCGGGAGTGATACAAGAGTGCAAGAGGAGACGGTTCTTCGAGAACAAGCAGGAGGAGAAGAAACGCAAGTCCCGCGAGGCTGCCAAGCGTAAAAGCAGAAGCAGGCGCCCTCTATCAAGATATCCAGTGCAAAACAAGCAGGATGTTGCTACAACCAAGAAGGAagaggatgatgatgataacTGGGATCTACCAGAAGCAGACGCTCCATATATTTGA 345 0.5159 MNPSLAHANTLFFRSAYNVQVAVDENEPEERLLNRFRREVMRAGVIQECKRRRFFENKQEEKKRKSREAAKRKSRSRRPLSRYPVQNKQDVATTKKEEDDDDNWDLPEADAPYI 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1942 114 Pfam Ribosomal protein S21 20 73 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 2 113 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 TIGRFAM S21p: ribosomal protein bS21 19 75 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 MobiDBLite consensus disorder prediction 57 114 - -
Ssu4g1942 114 Hamap 30S ribosomal protein S21 [rpsU]. 18 74 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 Gene3D Ribosomal protein S8 33 71 IPR038380 -
Ssu4g1942 114 PRINTS Ribosomal protein S21 family signature 22 30 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 PRINTS Ribosomal protein S21 family signature 42 52 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 PRINTS Ribosomal protein S21 family signature 30 39 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 PRINTS Ribosomal protein S21 family signature 54 64 IPR001911 GO:0003735|GO:0005840|GO:0006412
Ssu4g1942 114 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 2 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1942 Ssu-Chr4 36903384 36904990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1942 - - gmx:100780245 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1942 4 36903384 36904990 Ssu4g1942 4 36903384 36904990 ECH
Ssu4g1942 4 36903384 36904990 Ssu9g0443 9 22409231 22415824 PCT