Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0440 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCGTTGGGGCCTCTTCCTCATCCTTTGGCAATGCTGGAATACCCTCCAATTCTATACCTGCAAACCCTGGTTTTTCACAGTCCCAAGCTCAGGCCCAGATTCCTGTGGGTTTTCAAGGGCACTTTCCACTGTCCCAGGCCCATGCTATCGTCCAAGCTCAGTCCAAGGCTCAGGCCCAGGCTCAGGCACATGCCCAAGCAGCAGCTGCAGCCCATGCTCAACTCCAGGCTCATTTGCAAGCTCAGGGGTTGAGTCTTAGTCAGAACCAGGCTGGTGGTTTGGGGAGCTTGGGGGTGTCATCGCCATCGGTTTCTGGTAATGCGAGTGGGAAACGGATCCCTCTGAAACCCCCCATTCGGCCGGTTGGATTTTCCCCTCCCAACAGCTTCTCGCCTTTGAGACCGATGGAGCTCATGCCTGCCTCGAGGAGGAAGAAGCAGAAGCTCCCTGAGAAACAGCTGCAAGATAAAGTGGCTGCTATACTGCCTGAGTCTGTGCTGTATACACAGCTTCTCGAGTTTGAGTCTCGCGTTGACGCCGCACTTGCTAGAAAGAAGGCCGACATCCAGGAAGCACTCAAAAGCCCACCGTGTATTCAGAAAACTCTTCGAATCTATGTGTTTAACACTTTTGCTAATCAAATTCAGACCATTCCGAAGAAGCCAAATGCAGAGCCTCCAACCTGGACGCTGAAGATAGTTGGGAGGATATTGGAAGATGGTGTAGACCCTGATCAGCCGGGAGTGGTTCAGAAGTCATCTCCTTTGTATCCAAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTGGATCAGAGACTGTATCCCGATAATCACATTATTATGTGGGAGAACGCTCGATCACCTGCTCCGCATGAAGGTTTTGAAGTAAAGAGGAAAGGGGATAAAGAATTTACAGTGAATATACGGCTGGAAATGAATTATGTGCCGGAGAAGTTTAAGCTTTCACCAGCTTTGACAGAGGTTCTTGGTATTGAGGTTGATACCCGCCCGAGAATTGTTGCTGCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAAAACCCAAATGATCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAAAAAGTATTTGGAGAAGAAAAGATGAAGTTTACAATGGTTTCGCAGAAAATATCATCGCATTTGTTCCCCCCACAGCCTATACTTTTGGAGCATAAGATCAAACTCTCAGGAAACAGTCCAGCTGGGACTGCTTGTTATGATGTGACAGTTGATGTTCCTTTTCCTATTCAGAGGGAATTGTCTGCTTTATTGGCTAATGTGGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAGATCCATGAGCACCGCAGGAGACGGGCATTCTTCCTTGGATTCAGTCAATCACCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGCAGGGATCTGAAACTTGTAGCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGTCGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGTTATCTGAATCGCAAACCAGCTGCAGGAAGTGATGCTCCAGGAAGCACATGA 1641 0.4662 MSVNNNNPSKGVGASSSSFGNAGIPSNSIPANPGFSQSQAQAQIPVGFQGHFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQLQAHLQAQGLSLSQNQAGGLGSLGVSSPSVSGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELMPASRRKKQKLPEKQLQDKVAAILPESVLYTQLLEFESRVDAALARKKADIQEALKSPPCIQKTLRIYVFNTFANQIQTIPKKPNAEPPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVTVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGST 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0440 546 SUPERFAMILY SWIB/MDM2 domain 321 411 IPR036885 -
Ssu9g0440 546 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 95 538 - -
Ssu9g0440 546 SMART swib_2 327 406 IPR019835 -
Ssu9g0440 546 MobiDBLite consensus disorder prediction 1 42 - -
Ssu9g0440 546 CDD SWIB_like 333 401 - -
Ssu9g0440 546 MobiDBLite consensus disorder prediction 107 145 - -
Ssu9g0440 546 ProSiteProfiles SWIB/MDM2 domain profile. 326 403 IPR003121 -
Ssu9g0440 546 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 95 538 - -
Ssu9g0440 546 Pfam SWIB/MDM2 domain 330 401 IPR003121 -
Ssu9g0440 546 Gene3D SWIB/MDM2 domain 323 407 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0440 Ssu-Chr9 22066446 22068590 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu9g0440 SWIB 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0440 K11650 - gmx:100776562 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1940 4 36703249 36705112 Ssu9g0440 9 22066446 22068590 PCT