Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1940 ATGTCTGTGAACAACAATAACCCTACCAAGCCCCCTGGGGCCTCTTCCTCGTCTTTACCCGGAAGCTCCGCATACCCACGTTCCCAGCTTGCGCCGGGCCCGTATCCCCTGTCCCAGGCCCACGCCCACGCCCACGCCATCGTCCAAGCCCATTTCCAGGCTCAGTTACAAGCCCACGGGCTGAGCCTCAACCACAACGTCAAACGTTTCCCTCCAAAACCCCCCGTTCACACCGCCACGCCGTTCAAACAAACGGAACTCAGAAGAAAGAAGCATAAGCCAAACGAGAAACAGCTTCCTGAGAAAGCCGCCGCGATTCTTCCGGAATCGGCGCTGTACACTCAGCTTCTCGACTTGGAGGCATGTTTGGACGCTGCACTCGCTAGAAAGAAGGTCGACATACAAGAAGCGTTAAAAAACCCACCCTGCGTCCAGAAAACTCTTCGAATTTACGTGTTCAACACCTTCGCGAACCAGAATTGCGCCGAGTCTCCTTCGTGGACTCTTAAGATAGTTGGGAGGATATTGGAAGATGGAGAAGACCCTGAACAGCCAGGAGTTGTTGCTCAGAGGATGTCCCCTGTCTATCCGAAGTTCTCTGCGTTTTTCAAGAGAGTGACAATTTCTCTTGACAAGAGCCTGTATCCTGATAACCATGTTATCATGTGGGAGAATTCACGGTCCTCTGCGACTCATGAAGGTTTTGAAGTGAAGAGGAAAGGGGACAAGGAGTTCTCGGCGCAGATTCGGTTGGAGATGAATTATGTGCCAGAGAAGTTTATGCTGTCGCCGGCTTTGAGAGAAGTGCTTGGAATTCAGGTTGACACGCGGGCCAGGATTGTTTCTGCGATCTGGCATTATGTGAAGGCAAGGAAATTGCAGAACCAGAATGACCCTTCGTTCTTTCACTGTGATCAGGCTCTTCTGAAGGTGTTTGGGGAGGATAATGTGAAGTTTACGATGGTTTCACAGAAGATATCGCAGCATTTGTTCCCTCCTCAGGTTATACTTCTGGAGCATAAGATCAGGCTCTCCGGGAATAGTCCGGTTGCATCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAATTGTCTGCTTTGGTGGCCAATGTGGAGAGGAACAAAGAGATCGATGCGTGTGATGAGTCCATATGCGGAATCATTAGAAAAATACATGAGCACCGAAGGAGGCAAGcgttttttgttggttttagtCAATCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAACCAAGGATCTGAAAATTTTAGTTGGAGAATCTGGCCACAATGCTGAGAAAGAGCGTAAATCAGATTTCTTTAAGCAACCATGGGTTGAGGATGCTATTGTTCGCTATTTGAATCGCAAACCAGCCGCAGGAAGCAATGCTCCAGGGAGCACATGA 1428 0.4853 MSVNNNNPTKPPGASSSSLPGSSAYPRSQLAPGPYPLSQAHAHAHAIVQAHFQAQLQAHGLSLNHNVKRFPPKPPVHTATPFKQTELRRKKHKPNEKQLPEKAAAILPESALYTQLLDLEACLDAALARKKVDIQEALKNPPCVQKTLRIYVFNTFANQNCAESPSWTLKIVGRILEDGEDPEQPGVVAQRMSPVYPKFSAFFKRVTISLDKSLYPDNHVIMWENSRSSATHEGFEVKRKGDKEFSAQIRLEMNYVPEKFMLSPALREVLGIQVDTRARIVSAIWHYVKARKLQNQNDPSFFHCDQALLKVFGEDNVKFTMVSQKISQHLFPPQVILLEHKIRLSGNSPVASACYDVMVDVPFPIQRELSALVANVERNKEIDACDESICGIIRKIHEHRRRQAFFVGFSQSPLEFIKALVESQTKDLKILVGESGHNAEKERKSDFFKQPWVEDAIVRYLNRKPAAGSNAPGST 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1940 475 ProSiteProfiles SWIB/MDM2 domain profile. 255 332 IPR003121 -
Ssu4g1940 475 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g1940 475 MobiDBLite consensus disorder prediction 1 37 - -
Ssu4g1940 475 CDD SWIB_like 262 330 - -
Ssu4g1940 475 Pfam SWIB/MDM2 domain 259 330 IPR003121 -
Ssu4g1940 475 SUPERFAMILY SWIB/MDM2 domain 250 339 IPR036885 -
Ssu4g1940 475 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 72 472 - -
Ssu4g1940 475 Gene3D SWIB/MDM2 domain 252 335 IPR036885 -
Ssu4g1940 475 SMART swib_2 256 335 IPR019835 -
Ssu4g1940 475 MobiDBLite consensus disorder prediction 83 98 - -
Ssu4g1940 475 MobiDBLite consensus disorder prediction 65 98 - -
Ssu4g1940 475 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 72 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1940 Ssu-Chr4 36703249 36705112 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu4g1940 SWIB 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1940 K11650 - gmx:100785069 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1940 4 36703249 36705112 Ssu4g1940 4 36703249 36705112 ECH
Ssu4g1940 4 36703249 36705112 Ssu9g0440 9 22066446 22068590 PCT