Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0296 ATGGGCGCGAACCGGAGAAAGAGCGAGGACCCGCCGGCGGCGACGCTGGATCACGTGCTGCTGGCGTCGCGCGAGAGCGCGGAGGAGAGGGAGGCGCGGATTCGCGCCCTGTTCAACTTCTTCGACGCGGAGAGCCGCGGGTACTTGGATTTCGCCGTGATCGAGGGCGGGCTCTCGGCGCTGCGAATGCCCTCGGAGGAGAAGTACGCGAGGGACTTGCTGAGCGCGTGCGACGCCAACGAGGACGGGCGAGTGGACTACGAAGAGTTCAAGAGGTACATGGATGGAAAAGAGGTCGAGCTGTATCGGATATTTCAGGCCATCGATGTGGAGCACAGTGGGTGTATTCTCCCCGAGGAGCTCTGGCACGCGCTTGTGAGCGCAGGGATTCAGATTGATGATGAGGAACTTGCCCGATTTGTTGAGCGTGTTGACAAGGATAATAATGGGGTTATAACGTTTGGAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACTATTGAGAACATTTACCACTACTTGGAGCGAGTATGCCTGGTTGATATTGGGGAACAAACTGTTATTCCAGCAGGCATCATTGTGTTGCAAGTGCAAACAACGCGAGCTCATATAATGCCTGCAATAAAAGATATATGGAAAGAAGGTGGTTTCTTAGGATTTTTTCGAGGCAATGGCGTAAATGTTCTTAAGGTGGCTCCTGAGAGTGCTATTAGATTTTACACCTATGAGATGCTAAAGACCTTTATTGTGAATGCTAAAGGAGCAGAGGCAAAGGCTGATGTTGGTACTATGGGGCGGCTTCTAGCTGGTGGAACGGCTGGTGCTGTAGCTCAAACTGCAATATATCCTCTGGATCTTGTTAAAACACGAGTACAAACTTATGCTTGTGAAGGTGGAAGATTTCCCAGTCTTGGAACCCTCTCAAAAGATATATGGGTTCAGGAAGGACCCCGCGCATTTTACAAGGGCTTGATTCCTTCTGTTCTGGGCATTATCCCATATGCTGGCATAGATCTTGCTGCATATGAAACGTTGAAAGACATGTCCAAGAAATATATTCTTCATGATGAAGAACCTGGTCCTCTTGTACAATTAGGATGTGGGACGGTATCAGGTGCCCTTGGAGCAACCTGTGTTTACCCATTGCAGGTCGTTAGAACAAGAATGCAGGCTCAACGTGCTTATATGGGGATGGCTGATGTATTCAGGAGAACTtttaaacatgaagggtttaggGGGTTCTACAAAGGATTATTTCCTAACCTGCTCAAAGTTGTTCCATCTGCTAGTATCACTTATTTGGTCTATGAGAATATGAAAAAGGGCTTGGATTTGGAGTGA 1350 0.4822 MGANRRKSEDPPAATLDHVLLASRESAEEREARIRALFNFFDAESRGYLDFAVIEGGLSALRMPSEEKYARDLLSACDANEDGRVDYEEFKRYMDGKEVELYRIFQAIDVEHSGCILPEELWHALVSAGIQIDDEELARFVERVDKDNNGVITFGEWRDFLLLYPHEATIENIYHYLERVCLVDIGEQTVIPAGIIVLQVQTTRAHIMPAIKDIWKEGGFLGFFRGNGVNVLKVAPESAIRFYTYEMLKTFIVNAKGAEAKADVGTMGRLLAGGTAGAVAQTAIYPLDLVKTRVQTYACEGGRFPSLGTLSKDIWVQEGPRAFYKGLIPSVLGIIPYAGIDLAAYETLKDMSKKYILHDEEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRAYMGMADVFRRTFKHEGFRGFYKGLFPNLLKVVPSASITYLVYENMKKGLDLE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0296 449 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Ssu9g0296 449 Gene3D - 112 187 - -
Ssu9g0296 449 SUPERFAMILY Mitochondrial carrier 197 441 IPR023395 -
Ssu9g0296 449 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Ssu9g0296 449 Pfam EF-hand domain pair 100 156 IPR002048 GO:0005509
Ssu9g0296 449 CDD EFh 33 94 IPR002048 GO:0005509
Ssu9g0296 449 PANTHER SOLUTE CARRIER FAMILY 25 196 446 - -
Ssu9g0296 449 PANTHER SOLUTE CARRIER FAMILY 25 46 195 - -
Ssu9g0296 449 ProSiteProfiles Solute carrier (Solcar) repeat profile. 264 351 IPR018108 -
Ssu9g0296 449 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 196 446 - -
Ssu9g0296 449 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 46 195 - -
Ssu9g0296 449 Gene3D Mitochondrial carrier domain 189 446 IPR023395 -
Ssu9g0296 449 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Ssu9g0296 449 ProSiteProfiles Solute carrier (Solcar) repeat profile. 170 251 IPR018108 -
Ssu9g0296 449 Pfam EF-hand domain pair 62 94 IPR002048 GO:0005509
Ssu9g0296 449 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
Ssu9g0296 449 ProSiteProfiles Solute carrier (Solcar) repeat profile. 362 445 IPR018108 -
Ssu9g0296 449 PRINTS Mitochondrial carrier protein signature 371 393 IPR002067 GO:0055085
Ssu9g0296 449 PRINTS Mitochondrial carrier protein signature 226 246 IPR002067 GO:0055085
Ssu9g0296 449 PRINTS Mitochondrial carrier protein signature 324 342 IPR002067 GO:0055085
Ssu9g0296 449 PRINTS Mitochondrial carrier protein signature 279 297 IPR002067 GO:0055085
Ssu9g0296 449 Pfam Mitochondrial carrier protein 363 446 IPR018108 -
Ssu9g0296 449 Pfam Mitochondrial carrier protein 203 254 IPR018108 -
Ssu9g0296 449 Pfam Mitochondrial carrier protein 264 354 IPR018108 -
Ssu9g0296 449 Gene3D - 4 100 - -
Ssu9g0296 449 SUPERFAMILY EF-hand 27 191 IPR011992 -
Ssu9g0296 449 SMART efh_1 33 61 IPR002048 GO:0005509
Ssu9g0296 449 SMART efh_1 69 97 IPR002048 GO:0005509
Ssu9g0296 449 SMART efh_1 100 128 IPR002048 GO:0005509
Ssu9g0296 449 SMART efh_1 136 164 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0296 Ssu-Chr9 15096109 15098775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0296 4 449 EF-hand Containing Proteins AT5G07320 64.990 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0296 K14684 - gmx:100777729 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1829 4 33339076 33342028 Ssu9g0296 9 15096109 15098775 PCT