Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1829 atgGGGATGAAGAAGGCGTCGCCTGTGACGAGGGATCACGTGTTGCTGGCGTCGCAGGAGACGAAGGAAGCGAGGGAGACGAGGATTCGGAGCCTCTTCGATTTCTTCGACAGAGAGAATCGCGGGTTCCTGGACTATGCGCACATTGAGGCGGGTCTCTCGGCGCTGCAGATTCCGTCGGAGTATAAGTACGCGAAGGATTTGTTGAACGCATGCGATGCGGACAAGGACGGAAGAGTGGATTTCCAGGACTTCAAGAGGTACATGGACGACAAGGAGTTGGAGCTTTATCGCATATTTCAGGCCATTGATGTTGCGCATAACGGATGCATTTTGCCGGAGGAGCTTTGGGAGGCACTTGTGAGAGCAGGGATTAAGATTGAGGATGAGGAACTCGCCCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAAGCAACCATTGAGAACATTTACCATTATTTGGAGCGCATATGTATGGTTGATATTGGGGAACAGACTGTTATTCCAGCAGGCATTGGTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCAGCATCACGCACAGCAACTGCACCCCTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAGCAACACGAGCTCATATAATGCCTGCAATCAAAGATATATGGAAAGAAGGTCGTTTCTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTGTTAAGGTGGCCCATGAGAGCGccattaaattttatacctaTGAGATGCTGAAGACCTTCATTGTGAGGGCCAGAGGGAAAGAGGCAAAGGCTGATATTGGAGCTATGGGGCGGCTGCTAGCTGGTGGTATTGCTGGTGCTGTAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACACGACTACAAACCTATGCTTCTGAAAGTGGAAGAATTCCTAATCTTGGAACCCTTTCAAAAGATATATGGGTTCAGGAAGGACCCCGGGCATTTTATAGGGGATTGATTCCTTCTCTCCTTGGGATTATCCCTTATGCTGGCATAGATCTTGCTGCGTATGAAACCTTAAAGGATATGTCCAAGAAGTATATTCTTCACGATggagAACCTGGCCCTCTAGTACAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGAGCAACATGTGTTTACCCACTGCAGGTAGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAGGGAATGACTGATGTATTCAGGAAAACCATGGAACGTGAAGGCTTTAGGGGATTCTACAAAGGAATATTTCCTAGCTTACTCAAAGTTGTACCGGCAGCTAGCATCACCTACATGGTTTATGAGTCTATGAAAAAATGTTTGGATTTGGAGTGA 1428 0.4545 MGMKKASPVTRDHVLLASQETKEARETRIRSLFDFFDRENRGFLDYAHIEAGLSALQIPSEYKYAKDLLNACDADKDGRVDFQDFKRYMDDKELELYRIFQAIDVAHNGCILPEELWEALVRAGIKIEDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQTVIPAGIGKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQATRAHIMPAIKDIWKEGRFLGFFRGNGLNVVKVAHESAIKFYTYEMLKTFIVRARGKEAKADIGAMGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYASESGRIPNLGTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKKYILHDGEPGPLVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMTDVFRKTMEREGFRGFYKGIFPSLLKVVPAASITYMVYESMKKCLDLE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1829 475 PANTHER SOLUTE CARRIER FAMILY 25 43 472 - -
Ssu4g1829 475 Gene3D Mitochondrial carrier domain 190 473 IPR023395 -
Ssu4g1829 475 Pfam EF-hand domain pair 59 91 IPR002048 GO:0005509
Ssu4g1829 475 ProSiteProfiles EF-hand calcium-binding domain profile. 127 162 IPR002048 GO:0005509
Ssu4g1829 475 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 43 472 - -
Ssu4g1829 475 ProSiteProfiles EF-hand calcium-binding domain profile. 24 59 IPR002048 GO:0005509
Ssu4g1829 475 SUPERFAMILY EF-hand 21 190 IPR011992 -
Ssu4g1829 475 ProSitePatterns EF-hand calcium-binding domain. 140 152 IPR018247 -
Ssu4g1829 475 ProSiteProfiles Solute carrier (Solcar) repeat profile. 388 471 IPR018108 -
Ssu4g1829 475 ProSiteProfiles EF-hand calcium-binding domain profile. 96 126 IPR002048 GO:0005509
Ssu4g1829 475 Pfam EF-hand domain pair 95 154 IPR002048 GO:0005509
Ssu4g1829 475 SUPERFAMILY Mitochondrial carrier 192 466 IPR023395 -
Ssu4g1829 475 SMART efh_1 95 123 IPR002048 GO:0005509
Ssu4g1829 475 SMART efh_1 28 56 IPR002048 GO:0005509
Ssu4g1829 475 SMART efh_1 131 159 IPR002048 GO:0005509
Ssu4g1829 475 SMART efh_1 64 92 IPR002048 GO:0005509
Ssu4g1829 475 Gene3D - 8 172 - -
Ssu4g1829 475 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Ssu4g1829 475 Pfam Mitochondrial carrier protein 389 472 IPR018108 -
Ssu4g1829 475 Pfam Mitochondrial carrier protein 290 380 IPR018108 -
Ssu4g1829 475 Pfam Mitochondrial carrier protein 193 280 IPR018108 -
Ssu4g1829 475 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 277 IPR018108 -
Ssu4g1829 475 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 212 226 IPR002067 GO:0055085
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 199 212 IPR002067 GO:0055085
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 305 323 IPR002067 GO:0055085
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 397 419 IPR002067 GO:0055085
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 350 368 IPR002067 GO:0055085
Ssu4g1829 475 PRINTS Mitochondrial carrier protein signature 252 272 IPR002067 GO:0055085
Ssu4g1829 475 ProSiteProfiles Solute carrier (Solcar) repeat profile. 290 377 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1829 Ssu-Chr4 33339076 33342028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1829 3 475 EF-hand Containing Proteins AT5G51050 73.418 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1829 K14684 - gmx:100775805 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1829 4 33339076 33342028 Ssu4g1829 4 33339076 33342028 ECH
Ssu4g1829 4 33339076 33342028 Ssu9g0296 9 15096109 15098775 PCT