Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0284 ATGAAGAATAACAGCGCATCTGGTATTTTGAAGTTGATAGCTGCTCTGAGGTCAATGGCCAAGTCAAAAGCTTTGGCTCTCAAGTCCAAAACGAACGCCATCAAGGCTCGGTTGGTTATATTCTCACTTGTGATGAACAAGAAGTATGTGATGAGCACCATTTCTGATAAGTTCCAATCTCTTCTAGGGCATCATTCCCATCTCAAAGAAGATTGCTTATTGGAAGATGGCAGTGACTTGAACAAGTGCACTGTGGTGGTGGTCAATGACAATGCACACTTGCATGAGGCTGTGTCCAATATTAATCCCAGTGAGAccaaggtggtggtggaggacaaggatgatgatgatgatgggtGTGAATGTTGCTTCAGGtatgatggtgatggtgatgatggGGGTGAAGGCAAGTACCCGGATCTTACACACACAATGTTTGAGTCAGAGGATTTGGACCTTGGTGGGTCTGTGATTGATTTGGTGAAGAGTTCAAAGGAAGAGGCAGGGCAAGAGTTCAAAATGGAGGATGAAATTGATCACATGGCTGACCTTTTCATCAGGAAATTCCGCAGGCAAATCTTGTTGCAAAAGCAAGATTCTTTGAAGAGGCACCGTGAGATGCTGCTCAAATAA 633 0.3934 MKNNSASGILKLIAALRSMAKSKALALKSKTNAIKARLVIFSLVMNKKYVMSTISDKFQSLLGHHSHLKEDCLLEDGSDLNKCTVVVVNDNAHLHEAVSNINPSETKVVVEDKDDDDDGCECCFRYDGDGDDGGEGKYPDLTHTMFESEDLDLGGSVIDLVKSSKEEAGQEFKMEDEIDHMADLFIRKFRRQILLQKQDSLKRHREMLLK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0284 210 Pfam Cotton fibre expressed protein 175 208 IPR008480 -
Ssu9g0284 210 PANTHER EMB|CAB67623.1-RELATED 3 208 - -
Ssu9g0284 210 PANTHER COTTON FIBER PROTEIN 3 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0284 Ssu-Chr9 14629814 14630446 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0284 - - ccaj:109791419 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1817 4 33044455 33045087 Ssu9g0284 9 14629814 14630446 PCT