Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1817 ATGAAGAACAGAACATCAAGGTTGCTGAAGCAGATCATAACAAACCTGAGCTCAATGGCCAAGTCAAAAGCCATGGCCTTGAAGTCCAAAACAAACGCCGTAAGGGCTCGTTTGATCATATTCTCACTGATGAAGAACAAGAAGTTCTTGATGAGTTCCCTCTCCGAGAAGTTCCATTCTGTGTGGGGGAAAAACCACTCTCAGCCCAAGGAGGATTGCTTATTGGAAGAGGGCAGTGACCAAAGCAAGGCCATAGTGGTGTACAACAACAATGCACACTCCTATGAGGCCTTGCCAAACCCCAGTGAAACCCAAGTGGTGGAGGAGCAAGACCAAGATGGCTATGGAAGTTACTACAATTATGGTGATGGGGATGATGCTGTTGATGGTGATGATAATGACAAGTATCCGGATCTCACGCACACCCTTTTTGACTCGGAGGATTTGGACCTTGGAGGCTCAGTGATTAATTTGGTGAAGAATTCCAAGGAAGAGGCAGGGAAAGAGTTTAAACTGGAGGATGAGATTGACCTTGCTGCTGACCTTTTTATCATTAAGTTCCGCAGGCAAATGGTCTTGCAGAAGCAAGAGTCATTGAAGAGGCAGAGGGAAATGCAGCAAAAGGGTGCATGA 633 0.4613 MKNRTSRLLKQIITNLSSMAKSKAMALKSKTNAVRARLIIFSLMKNKKFLMSSLSEKFHSVWGKNHSQPKEDCLLEEGSDQSKAIVVYNNNAHSYEALPNPSETQVVEEQDQDGYGSYYNYGDGDDAVDGDDNDKYPDLTHTLFDSEDLDLGGSVINLVKNSKEEAGKEFKLEDEIDLAADLFIIKFRRQMVLQKQESLKRQREMQQKGA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1817 210 PANTHER EMB|CAB67623.1-RELATED 1 208 - -
Ssu4g1817 210 PANTHER COTTON FIBER PROTEIN 1 208 - -
Ssu4g1817 210 Pfam Cotton fibre expressed protein 173 205 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1817 Ssu-Chr4 33044455 33045087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1817 - - gmx:100807332 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1817 4 33044455 33045087 Ssu4g1817 4 33044455 33045087 ECH
Ssu4g1817 4 33044455 33045087 Ssu9g0284 9 14629814 14630446 PCT