Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0256 ATGGGAGCGAGTCGAAAACTTCAGGGCGAGATTGATCGTGTTCTAAAGAAGGTTCAGGAAGGCGTCGAAGTCTTCGATAGCATCTGGAATAAGGTTTACGACACGGACAATGCGAACCAGAAGGAGAAGTTCGAGGCTGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTACAGGGACCAGATTAAGACTTGGATTCAGTCCAGTGAGATCAAAGACAAGAAGGTTAGTGCCTCGTATGAGCAGGCTCTGGTGGATGCACGCAAGCTTATTGAGCGTGAAATGGAAAGATTCAAGATCTGTGAGAAGGAGACAAAGACAAAAGCATTCTCCAAAGAAGGCTTGGGTCAACAACCTAAAACTGATCCTAGAGAGAAGGCTAAGTCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATCGATAGCTTCGAAGCTGAGCTTGAAGGACTTTCTGTAAAGAAAGGAAAGAGTAGGCCACCCAGATTGaCACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAGCAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTAGAGCGTAATCAGGAGGACTTTGAAGAATTTAGTGATGTTGATGACCTCTACAGTTCATTACCCTTAGACAAGGTGGAATCACTTGAAGATCTTGTTACAATTCCCCCTGGTCTTGCTAAGGTGGCACCTGTGCTTAGCTTGAAGCCTTCTTTGGCAGCATCAGCATCAGCATCAGCATCAGCTTCTGCATCACAAACATCTGAGCAAGCAGATGATACAGCTTCCCAGGATAGCAATTCTGATATTGGTGCAAGAACTCCACCTCCTAAAAGTAGTGTAGTTAGTTCTACCACTACAACACCAGCTGGGAACTTTGCTACTCCTGTTTCTATGAATGTACCAGTGCCGAACTTGTCGAGTGCACCGGCCATTGCATCAGTCATGCCTGCTTCAAATTCTGTTCGGAGTTCCTTGGAGATTAGTAGTgctgtcaatgtttcatcttttgTAAATCAGTCTAGCACTATGAAGGAGGAAGAGATTAATAGTTTCCCTGGCCCAAGACCATCTCCATCGCTTTCTGATGTTGCACTTGTAAGGAACATCAGCAGAAACAGCCTATCAAATCAAGCAACAAATAGCATTCCTCTTGTTTCTGGCAACATGGTTTCCAGCAATGGGCCCCTTGGTTCAGTCCCTTCAGCATCTGAAATAACCAAGAGAAACATATTGGTAGCTGACGATAGACTCGGAAGCAATGGGATGGTGCAGCCTCTTGTATCCCCCTTAAGTAATAGAATGATCATGCCTCAGGTTGCAAGAGCTAATGATGGAACTTCCTCAGTTGACTCTAGTAATGTCAATGAAGCTGCAACTGTATCTGGGAGAGTTTTCTCCCCTTCTGCTGTTCCTGGCATGCAATGGAGACCTGGAAGCCCCTTCCAGAATCAGAATGATGTGGTTCAGATTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAGATATTTGCAGAAGTTGCAGCAAGTGCAGCAACAAGGGCCAAATGCCTTTCTTAATATGCCATCTTTTGCAGGCGGGAATCATAAACAGTTTTCTGCTCAGCAACAAAATCCTCTCTTACAGCAGTTCAATTCTCAAGGCTCATCTGTTACTTCTCAATCTGGGGTGGGAATTGGAGTCCAGTCACCAGGTCTTAGTGGTATTGCTTCCACCTCATTACCGCAGCCACCCAATTCTGTCCATTCCCCATCTAGCCAACAACCATTGCTGTCAGTTGTTTCTAAAGATGCAGGTATATTTTGTGTTACTTTTATTCACTCTTATGATTTGTTGAAGGTTATTAGAGGtgttataaaaACAGGAGTACCTGCCTCTCTTCCAGAGCCTGCTCAGACTTCTAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAATCAAATCAGCGTACTGGTAACCTTGGTGTTATAGGAAGAAGTTCTAGTGACCTTGGAGCTGTTGGTGACAACTTTAGTGCATCAATTGCTAATTCTGGCGGAGTTCATgatcaattatataatttgcaGATGCTTGAGGCAGCTCACCTCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTAAACACCCTACGATAACACCTCCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGCCTCGAACCATTTGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGAACACTTACCAACAATATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACCGGAAGTATAACACATGGTTTCAACGGCACGAAGAGCCAAAAGTTGCAACAGATGAATATGAGCAGGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAACATGGGTGGTGTCAAAGAATCAAGACTGACTTcacttttgaatataattatcttGAAGATGAGCCTATTGTCTAG 2601 0.4268 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYSSLPLDKVESLEDLVTIPPGLAKVAPVLSLKPSLAASASASASASASQTSEQADDTASQDSNSDIGARTPPPKSSVVSSTTTTPAGNFATPVSMNVPVPNLSSAPAIASVMPASNSVRSSLEISSAVNVSSFVNQSSTMKEEEINSFPGPRPSPSLSDVALVRNISRNSLSNQATNSIPLVSGNMVSSNGPLGSVPSASEITKRNILVADDRLGSNGMVQPLVSPLSNRMIMPQVARANDGTSSVDSSNVNEAATVSGRVFSPSAVPGMQWRPGSPFQNQNDVVQIRGRTEIAPDQRERYLQKLQQVQQQGPNAFLNMPSFAGGNHKQFSAQQQNPLLQQFNSQGSSVTSQSGVGIGVQSPGLSGIASTSLPQPPNSVHSPSSQQPLLSVVSKDAGIFCVTFIHSYDLLKVIRGVIKTGVPASLPEPAQTSRDIDLSPGQPLQSNQRTGNLGVIGRSSSDLGAVGDNFSASIANSGGVHDQLYNLQMLEAAHLKLPQPKDSERPRTYTPKHPTITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0256 866 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Ssu9g0256 866 MobiDBLite consensus disorder prediction 651 684 - -
Ssu9g0256 866 Coils Coil 41 61 - -
Ssu9g0256 866 Gene3D - 706 861 IPR038635 -
Ssu9g0256 866 MobiDBLite consensus disorder prediction 272 312 - -
Ssu9g0256 866 MobiDBLite consensus disorder prediction 663 684 - -
Ssu9g0256 866 Coils Coil 139 159 - -
Ssu9g0256 866 Pfam NOT2 / NOT3 / NOT5 family 723 860 IPR007282 GO:0006355
Ssu9g0256 866 PIRSF NOT_su_3_5 1 866 IPR012270 GO:0006355|GO:0030015
Ssu9g0256 866 MobiDBLite consensus disorder prediction 725 751 - -
Ssu9g0256 866 MobiDBLite consensus disorder prediction 110 131 - -
Ssu9g0256 866 PANTHER CCR4 NOT-RELATED 1 864 IPR040168 GO:0030015
Ssu9g0256 866 PANTHER BNAA10G16600D PROTEIN 1 864 - -
Ssu9g0256 866 MobiDBLite consensus disorder prediction 595 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0256 Ssu-Chr9 13521569 13552061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0256 K12580 - gmx:100780204 1493.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1793 4 32281920 32293123 Ssu9g0256 9 13521569 13552061 PCT