Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1793 ATGGGTGCGAGTCGAAAGCTTCAGGGAGAGATAGATCGCGTTCTTAAGAAGGTCCAGGAAGGCGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAATTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGaggtatagagaccaaattaagacttGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTTTGGTGGATGCACGCAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAGGGCTTGGTTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCCCAGATCGATAACTTTGAAGCAGAGCTTGAGGGGCTTTCTGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGACACAAGgctcatataaaaaaatgtgaattcaTTTTAAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTTGAGCGTAATCAGGAGgattttgatgattttaatGATGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGAGACCCTAGAAGATCTTGTTACAATTCCCCCTGGTCTTTCTAAGGTGGCACCTAGTCTTAGCTTGAAGAATTCTTTGGCAGTATCAACATCACAATCAGCATCAGCATCTGCATCACAAACAtctGATACCTCTGTCCAGGAGCAAGCTGATGACACAGCGTCCCAGGATAGCAATTCTGACATTGTTGCCAAAACTCCACCTCCTAAAAGTGGTGGAATTAGTTCTGCTACCTCAACTCCTGCTGGCAACCATGCTACTCCTGTTTCCGTGAATGTTTCTGGTCATAACTTGTCTAGTGCACCTGCTGTTGCAGCCCTACCTGGTTCAAATTCTGTGCGGAATGTCTTAGAGAATACTAATGTTACCAATTCATCTTCTGTAAATCAGTCTACCTCTACAAAGGAAGAAGAGATTAACAGCTTCCCTAGCCGGAGACCATCTCCATCGCTTTCTGATGCTACACTTTTGAGGGGCAGAAACAGCCTGTCAAATCAAGCAACAGCCAGCATTCCTCTTGGTTCTGGAAACATGGTTTCTAGCAATGGGGCCCTTGGATCAGTCCCTTCAACCTCTGAAATAGCTAAAAGGAACATATTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCACTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACTGTTTCAGTTGACTCTAGTACTGTTAATGAAGCTGCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGCCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGgaaaaatttttgcaaaagtaTCAGCAAGTGCAACAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTTGTAGGGGGAAATCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGAGTCCAGTCCACAAGTCTCAGTGGTATTTCTTCTGCATCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACTGCCATTGATGCCAGGCGTTTCTAAAGATGCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAGCATCAGAATTTTCCTGATGAGTCAACAACTGAAACTACTTCTAGCACTGGGATTGGCAAGAATCTTGTAAATGAAGATGATTCAAAATCAGCATATGCTGTAGATTCTCCTGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATTGATTTGTCTCCTGGCCAACCATTACAATCCAACCAACCTACTGGCAACCTTGGTGTCATTGGAAGAAGAAACGGTGCTGAACTTGGAGCCATTGGTGATAATTTTAGTGGATCAAGTGCTAGTTCTGGTGGAGTGCGTgatcaattatataatttgcaAATGCTTGAGGCGGCCCACTGCAAAATTCCACTACCCAAAGACTCAGAACGTCCCAGAACTTACACTCCTAAGCATCCGGCAATTACACCTCCTAGCTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACTTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACTGATGAATATGAGCAGGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGAACTTCTTGTATAG 2685 0.4201 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLVQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFNDVDELYSSLPLDKVETLEDLVTIPPGLSKVAPSLSLKNSLAVSTSQSASASASQTSDTSVQEQADDTASQDSNSDIVAKTPPPKSGGISSATSTPAGNHATPVSVNVSGHNLSSAPAVAALPGSNSVRNVLENTNVTNSSSVNQSTSTKEEEINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSGNMVSSNGALGSVPSTSEIAKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVSVDSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSASLQQPPNSVHSPSSQLPLMPGVSKDADVGNSKIEEQQQHQNFPDESTTETTSSTGIGKNLVNEDDSKSAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAELGAIGDNFSGSSASSGGVRDQLYNLQMLEAAHCKIPLPKDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDELLV 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1793 894 MobiDBLite consensus disorder prediction 595 712 - -
Ssu4g1793 894 Coils Coil 41 61 - -
Ssu4g1793 894 PANTHER CCR4 NOT-RELATED 1 894 IPR040168 GO:0030015
Ssu4g1793 894 MobiDBLite consensus disorder prediction 679 709 - -
Ssu4g1793 894 MobiDBLite consensus disorder prediction 271 332 - -
Ssu4g1793 894 Pfam NOT2 / NOT3 / NOT5 family 751 888 IPR007282 GO:0006355
Ssu4g1793 894 MobiDBLite consensus disorder prediction 405 426 - -
Ssu4g1793 894 MobiDBLite consensus disorder prediction 632 660 - -
Ssu4g1793 894 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Ssu4g1793 894 MobiDBLite consensus disorder prediction 595 617 - -
Ssu4g1793 894 PANTHER BNAA10G16600D PROTEIN 1 894 - -
Ssu4g1793 894 MobiDBLite consensus disorder prediction 357 393 - -
Ssu4g1793 894 Coils Coil 132 159 - -
Ssu4g1793 894 PIRSF NOT_su_3_5 1 894 IPR012270 GO:0006355|GO:0030015
Ssu4g1793 894 Gene3D - 735 889 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1793 Ssu-Chr4 32281920 32293123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1793 K12580 - gmx:100785965 1581.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1793 4 32281920 32293123 Ssu9g0256 9 13521569 13552061 PCT