Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0254 ATGGGAAAAGGGTGGTTTTTGAGATGGGTTATGGTGGTTGGGGTGATGGGTTGGTGTGTGGAAGTGGAAGGGCTTGGGGTGAATTGGGGGACCCAAGCCACACACCAGTTGAGGGCAGACACTGTGGTTCAGATGTTGAAGGACAATGGGATTCAGAAGGTGAAGCTGTTTGACGCAGATGAGTCTAGCATGGGTGCTCTAGCTGGGTCTGGGATTGAAGTCATGGTTGCCATCCCCAATAACCAGCTTGCTGAGATGAATGACTATGATCGTGCCATGCAGTGGGTGAAGAAAAATGTTACTCGTTACAACTTCCGGGGTGGAGTTAACATCAAGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAATGTCACATTCCCTGCATTACAGAACATTCAAAATGCCCTCAATGCTGCTGGTGTAGGAGACTCCATAAAGGCCACAGTGCCCTTAAATGCTGATGTGTATGAGTCTCCACCGAACAATCCTGTTCCATCAGCAGGAATATTTAGGCCTGACATAAGTGATCTAATGACCCAGATAGTGCAATTTTTGGCAAAGAGTGGTGCACCATTCACAGTGAACATTTACCCCTTCTTGAGCCTTTATGGGAATGACAATTTTCCTTTTGACTATGCCTTCTTTGATGGGGTAGCCAATCCCATAAATGATAATGGGGTTTCATACACCAATGTTTTTGATGCAAATTTTGACACCTTGGTCTCTGCCCTCAAAGCAGTGGGGTATGGGAACATGCCCATTTTGGTAGGAGAAGTAGGGTGGCCCACAGATGGTGACAAGAATGCTAATGTGGGCAATGCTTTTAGGTTCTATAATGGGCTTCTTCCAAGGCTTGCAGCAAATAAAGGGACCCCACTCAGGCCCGGGTTTATTGAAGTTTATCTATTTGGGCTTATTGATGAGGATGCCAAGAGCATTGCCCCAGGGAACTTTGAGCGCCATTGGGGAATTTTTAGGTATGATGGGCAGCCCAAGTTTCCAATGGATCTTTCTGGCCAAGGTCAAAACAAGTTACTAGTTGGTGTACAAAATGTGCATTATCTTGATTCAAAGTGGTGCATGTTTAATCCAGATGCACAGGATCTAAGCAAACTTGCagacaatattaattatgcATGCACCTTTGCAGATTGCACTGCGCTTGGATATGGGTCTTCTTGCAACAACCTGGATGCTAATGGGAATGCATCATATGCATTTAATATGTACTACCAGACGCAGGATCAGAATTACATGGCCTGCAATTTTGAAGGTTTAGCAAGGCTCACAACAAACAATATTTCAACACCTACTTGCAATTTTATTATTCAGATAAATCCTTCCTCGTCCTCTTCTTTGAGGCCCCCAGTAGTACCTTTCTTATTTATCACTCTACCCTTGATTCTAATTTTGTAG 1440 0.4368 MGKGWFLRWVMVVGVMGWCVEVEGLGVNWGTQATHQLRADTVVQMLKDNGIQKVKLFDADESSMGALAGSGIEVMVAIPNNQLAEMNDYDRAMQWVKKNVTRYNFRGGVNIKYVAVGNEPFLKSYNGSFLNVTFPALQNIQNALNAAGVGDSIKATVPLNADVYESPPNNPVPSAGIFRPDISDLMTQIVQFLAKSGAPFTVNIYPFLSLYGNDNFPFDYAFFDGVANPINDNGVSYTNVFDANFDTLVSALKAVGYGNMPILVGEVGWPTDGDKNANVGNAFRFYNGLLPRLAANKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQGQNKLLVGVQNVHYLDSKWCMFNPDAQDLSKLADNINYACTFADCTALGYGSSCNNLDANGNASYAFNMYYQTQDQNYMACNFEGLARLTTNNISTPTCNFIIQINPSSSSSLRPPVVPFLFITLPLILIL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0254 479 Gene3D - 361 460 - -
Ssu9g0254 479 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Ssu9g0254 479 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Ssu9g0254 479 Gene3D Glycosidases 24 352 - -
Ssu9g0254 479 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Ssu9g0254 479 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 3 464 - -
Ssu9g0254 479 Pfam X8 domain 366 435 IPR012946 -
Ssu9g0254 479 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 3 464 IPR044965 GO:0004553|GO:0005975
Ssu9g0254 479 SMART X8_cls 366 449 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0254 Ssu-Chr9 13451973 13455245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0254 9 453 Miscellaneous Gene Families AT1G64760 75.730 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0254 - - gmx:102666963 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1792 4 32234623 32237552 Ssu9g0254 9 13451973 13455245 PCT