Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1792 ATGGAGAAAAATTGGCTTTTGAGATGGGTGTTGGTGGTGGGGGTGATGTGTTGGTGTGTGGAAGGGCTTGGTGTGAATTGGGGGACCCAAGCAACCCACAAGTTGCCACCAGACACGGTGGTTCAGATGTTGAAGGATAATGGGATTCAGAAAGTGAAGCTTTTTGATGCAGATGACTCCACCATGAATGCTTTGGCTGGGACTGGGATTGAAGTCATGGTTGCCATCCCTAATAACCAGCTTGCTGAGATGAATGACTATGGCCGGGCCAAACAGTGGGTTAAGAAAAACGTCACACGTTACAACTTCAATGGAGGAGTTAATGTCAAGTATGTAGCGGTTGGGAACGAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAATGTCACCCTCCCTGCACTGCAGAACATTCAAAATGCCCTTAACGAAGCAGGTATTGGAGACACCGTAAAGGCCACAGTGCCCTTGAATGCTGATGTGTATCAGTCTCCGGAGAGCAATCCTGTTCCATCTGCAGGAATATTTAGGCCTGATATCAGTGGTCTCATGACCCAGATAGTGCAATTTCTCAGCAAGAATAGCGCGCCATTTACCGTGAACATTTACCCCTTCTTGAGTCTTTATGGGAACGATgattttcctttcaactacgcCTTCTTTGATGGCGTAGACAATCCGATAAATGATAACGGAACTCCGTACACCAATGTCTTCGACGCGAATTTCGATACCTTGGTTGCTGCTCTCAAGTCAGTGGGGTATGGGGACATGCCCATTTTGGTGGGAGAAGTAGGGTGGCCTACAGAAGGGGACAAGAATGCCAATGTGGGCAATGCTTTGAGGTTCTATAATGGCCTTCTGCCAAGGCTTGCAGCAAATAAAGGCACCCCGCGCCGCCCGGGACGTATCGAAGTTTACCTATTTGGACTCATTGATGAGGATGCCAAGAGCATTGCTCCAGGAAACTTTGAACGCCACTGGGGAATATTCAGGTATGATGGGCAACCCAAGTTTCCAATGGACCTCTCTGGTCAGAACCAAAACAAGTTTCTCACAGGTGCACAGAATGTGAAGTATCTTGCTCCTAGGTGGTGCATGTTTAACCCAGATGCCAAGGATCTCAGCAGACTTCCAGATAACATTAACTATGCTTGCACCTTTGGAGATTGCACTGCACTTGGCTACGGGTCTTCTTGCAACAATTTGGATGCTAATGGGAATGCCTCTTATGCGTTTAATATGTACTTCCAGGTGCAAAATCAGAACCCCATGGCCTGCAATTTTCAAGGCTTGGCCAAGCTTACTACCGACAATATCTCAACACCCGCGTGCAATTTTATCATTCAGATAGTTTCTTCTTCAGGCTCTTCTTTGATGCCCTCACTTGTGGCCTTCTTATTTGTTACTTTAGTCGTGATTCTGTTTTCGTAG 1434 0.4589 MEKNWLLRWVLVVGVMCWCVEGLGVNWGTQATHKLPPDTVVQMLKDNGIQKVKLFDADDSTMNALAGTGIEVMVAIPNNQLAEMNDYGRAKQWVKKNVTRYNFNGGVNVKYVAVGNEPFLKSYNNSFLNVTLPALQNIQNALNEAGIGDTVKATVPLNADVYQSPESNPVPSAGIFRPDISGLMTQIVQFLSKNSAPFTVNIYPFLSLYGNDDFPFNYAFFDGVDNPINDNGTPYTNVFDANFDTLVAALKSVGYGDMPILVGEVGWPTEGDKNANVGNALRFYNGLLPRLAANKGTPRRPGRIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQNQNKFLTGAQNVKYLAPRWCMFNPDAKDLSRLPDNINYACTFGDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQNPMACNFQGLAKLTTDNISTPACNFIIQIVSSSGSSLMPSLVAFLFVTLVVILFS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1792 477 Gene3D Glycosidases 22 351 - -
Ssu4g1792 477 SMART X8_cls 364 447 IPR012946 -
Ssu4g1792 477 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Ssu4g1792 477 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 466 IPR044965 GO:0004553|GO:0005975
Ssu4g1792 477 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 2 466 - -
Ssu4g1792 477 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Ssu4g1792 477 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Ssu4g1792 477 Gene3D - 361 458 - -
Ssu4g1792 477 Pfam X8 domain 365 433 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1792 Ssu-Chr4 32234623 32237552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1792 6 453 Miscellaneous Gene Families AT1G64760 76.339 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1792 - - gmx:100815300 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1792 4 32234623 32237552 Ssu9g0254 9 13451973 13455245 PCT