Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0971 ATGAATctcattctctttttctctatttcccaACACAATCTCACTGTTGTTGGTGCTGACGGTTCGTACACCAAACCATTGACAAGGGATTACATTTGCATATCACCTGGACAAACAATGGATGTATTGTTGCATGCTAACCAAGAACTTAGTCATTACTATCTAGCGGCAAGGGCATATTCAAGTGGGATTGCTGTTGCCTTTGATAACACCACAACCACTGCTAAAGTAGAGTATAGTGGGAATTACACTCCACCTTCATCTCTTTCATTACCTTACCTTCCCAACTTTAATGACACACATGCAGCTTTTGACTTCATTACAAGCTTGAGAGGCTCACCTAAGAGTTGCCCTCGCTCGGTCCCAACAAACATCACAACTCAAATAGTGACAACTATTTCTGTTAACACTTTGCCATGCCCCAATGGCAGAACCTGCCAGGGTCCAAATGGAACCATTTTCTCTGCTAGCATGAACAACATAAGTTTTCAAACCCCTAACATTGACATACTAAAAGCCTACTACTACCATATCAATGGGGTATTTGAAATAGGATTTCCCCAATTTCCACCGTTTATATTTAACTTCACTGCAGATTTTTTGCCTCTTACACTGAATATACCAAAGCAAGGGACTAAGGTTAATGTGCTAAACTTTGGAACAACAGTTGAAATTGTTTTCCAAGGGACAAACGTTGTTGGAGGGATAGACCATCCTATCCATCTTCATGGGTTCAGTTTCCATGTTGTTGGGTATGGGTTAGGCAATTTTAACCAAAGCAAGGACCCCATGAATTTCAATCTCGTTGATCCTCCTTTTGTGAATACAGTAATTGTGCCTATAAATGGCTGGGCTGCCATTAGGTTCGTGGCTAACAACCCTGGAGTATGGTTTATGCACTGCCATCTAGAACGCCACCAATCTTGGGGCATGGAGACAGTGTTTATTGTGAAGAATGGAAAGTTTTCAAATCAgacattgccaccaccaccaccagacATGCCCCTATTAATggaattttttaccttttttttttcttctctaccctttccatataatttaaacaattttattgagTTTCTTTGTCTGTGTGGTCCTCtgatgttgttattgttgttgttgttcttgtcCGTGAGAGACGCTCCATACACAAAACTTTGCAGCACAAAAAACATCTTGACCGTAAATGGGCAATTTCCTGGTCCAACACTATATGTTAACAAAGGAGAAACCATCATTGTTGATGTGTATAACCGAGCTAACTACAACATCACCATTCACtggCATGGAGTGAACCAACCAAGATATCCATGGTCTGATGGCCCTGAATATGTGACACAATGTCCTATTCGACCGGGTGGAAAGTTCAGTCAGAAGGTGATATTTTCTGAAGAGGAAGGCACACTGTGGTGGCATGCTCACAGTGACTGGTCTCGAGCCACCGTTCACGGGGCTATTGTGGTCAAACCCAAGTCTGGAACTACCTATCCATTTCCAAAACCACACAAAGAGGTCCCAATTATATTAGgtGAATGGTGGAAGAAAGATGTTGTTGAGGTTTACAATGATCTTCGTAGAACTGGAGGAGACGCGGCGCTTTCTGATGCTTATACAATTAATGGCCAACCTGGTGATCTTCATCCATGCTCAAAGAATGAAACATTCAAGCTTAGTGTTGAACATGGGAAAACGTATCTGCTGAGAATGGTGAATGCGGCAGTTCAGGACATTCTGTTCTTTGCCATTGCGAAACATCAACTCACCGTGGTGGGAACTGATGGTAGCTACGCAAAGCCAGTGAAGGTAGATTACATCACAATATCTCCTGGACAAACAATGGATGTGTTACTATAA 1854 0.39 MNLILFFSISQHNLTVVGADGSYTKPLTRDYICISPGQTMDVLLHANQELSHYYLAARAYSSGIAVAFDNTTTTAKVEYSGNYTPPSSLSLPYLPNFNDTHAAFDFITSLRGSPKSCPRSVPTNITTQIVTTISVNTLPCPNGRTCQGPNGTIFSASMNNISFQTPNIDILKAYYYHINGVFEIGFPQFPPFIFNFTADFLPLTLNIPKQGTKVNVLNFGTTVEIVFQGTNVVGGIDHPIHLHGFSFHVVGYGLGNFNQSKDPMNFNLVDPPFVNTVIVPINGWAAIRFVANNPGVWFMHCHLERHQSWGMETVFIVKNGKFSNQTLPPPPPDMPLLMEFFTFFFSSLPFPYNLNNFIEFLCLCGPLMLLLLLLFLSVRDAPYTKLCSTKNILTVNGQFPGPTLYVNKGETIIVDVYNRANYNITIHWHGVNQPRYPWSDGPEYVTQCPIRPGGKFSQKVIFSEEEGTLWWHAHSDWSRATVHGAIVVKPKSGTTYPFPKPHKEVPIILGEWWKKDVVEVYNDLRRTGGDAALSDAYTINGQPGDLHPCSKNETFKLSVEHGKTYLLRMVNAAVQDILFFAIAKHQLTVVGTDGSYAKPVKVDYITISPGQTMDVLL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0971 617 Gene3D - 144 342 IPR008972 -
Ssu7g0971 617 CDD CuRO_3_LCC_plant 181 320 IPR034289 GO:0005507
Ssu7g0971 617 Pfam Multicopper oxidase 206 320 IPR011706 GO:0005507|GO:0016491
Ssu7g0971 617 Pfam Multicopper oxidase 379 492 IPR011707 GO:0005507
Ssu7g0971 617 ProSitePatterns Multicopper oxidases signature 2. 300 311 IPR002355 GO:0005507
Ssu7g0971 617 Pfam Multicopper oxidase 5 82 IPR001117 -
Ssu7g0971 617 Pfam Multicopper oxidase 504 617 IPR001117 -
Ssu7g0971 617 CDD CuRO_1_LCC_plant 378 490 IPR034288 GO:0005507
Ssu7g0971 617 PANTHER MULTI-COPPER OXIDASE 2 335 IPR045087 -
Ssu7g0971 617 SUPERFAMILY Cupredoxins 3 112 IPR008972 -
Ssu7g0971 617 SUPERFAMILY Cupredoxins 148 339 IPR008972 -
Ssu7g0971 617 ProSitePatterns Multicopper oxidases signature 1. 295 315 IPR033138 -
Ssu7g0971 617 Gene3D - 1 115 IPR008972 -
Ssu7g0971 617 Gene3D - 502 617 IPR008972 -
Ssu7g0971 617 CDD CuRO_2_LCC_plant 505 617 IPR034285 -
Ssu7g0971 617 PANTHER MULTI-COPPER OXIDASE 363 617 IPR045087 -
Ssu7g0971 617 Gene3D - 380 499 IPR008972 -
Ssu7g0971 617 PANTHER LACCASE 2 335 - -
Ssu7g0971 617 PANTHER LACCASE 363 617 - -
Ssu7g0971 617 SUPERFAMILY Cupredoxins 498 617 IPR008972 -
Ssu7g0971 617 SUPERFAMILY Cupredoxins 377 515 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0971 Ssu-Chr7 21140470 21172349 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0971 K05909 - mnt:21390272 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0178 9 10979037 11025991 Ssu7g0971 7 21140470 21172349 PCT