Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1597 ATGAGCTTTAGCTTCTCACGGCATAGACacaaagatgaaaaggatatgAAGGTGGTAGTGGAGATCATTGATGCTCGTGATCTTATGCCCAAAGACGGTGAGGGATCAACAAGTGCATTTGTGGAAGCAGACTTTGAAAATCAACTAAGCAGAACCAAACTGTCCCAAAAAAACTCAACCCCACTTGGAATCACAAACTATTTTTCCAATTGGATGCAACCAAACCTTACCATCACCAAACTATTGAAGTCTCAGTCTACCACGAGAGGAGGCCTATTCCGGGCCGAAACATCCTTGGAAGGAATTAGAAAACCTCTCATCTCCAACTTCACCAAAGTACCAGAATCCAAATCCAAATCCAACACTACTAATCTTCCTCATTGTCCTCCCCCAACCATAGAAAATATATACCTTACTGACATAACATCAGAAACCAACCCCAACGTTGAAGGTCCTGCATTTGACACCCCAAAAGCAATCACAGAAGAAGCTGAGAAAGTAAACTCAGCTGCAGTAACAAATTTCCACACTGCAGCAGCTCAGTCTAGTGGCATTGATACTGATCAAGATCCAAAAGGGGCAAGCATAGAGATAACACACCAACTACACAAACACCAAGTTCACCAGCAGCCAATGATTTCAATAAAGAGAAGACAAAGAGGTGCTCCGGTCACAATGCACTCAATTAGCCCTCAAGTCCATCCTAGTAGCCAAGATGAAGACTACAATCTGAGGGAGACCGATCCACAGCTCGGGGTGCGGTGGCCTAATGCTGGAAGAGGGTGGATGGGTGGTGGTGAAAGGTTCACAAGCACACATGATCTTGTTGAGCAGACGTTCTATCTTTATGTTAGGGTAGTGAGAGCCAAGGATCTTCCCCCCAGCACTCTCACCTCAAGTTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGAAGAACAAAGCACATAGAGAAGAAAACCAACCCGGAGTGGAACCAAGTCTATGCTTTCTCCAAAGACAGAATTCAGTCTTCTGTTTTGGAAGTCATTGTAAAAGACAAAGATATGGTGGGAAGAGATGATTATATTGGAAGGGTGGCATTTGATCTCAATGAGGTTCCAACCAGAGTTCCCCCAGATAGTCCACTTGCTCCTCAGTGGTACAGACTCGAGGACTGGCGAGGAGAAGGGAAGGTGAGGGGTGATATCATGCTTGCAGTCTGGATGGGAACTCAAGCTGATGAAGCCTTCTCAGAGGCTTGGCATTCTGATGCTGCCACTGTGTATGGAGAAGGTGTTTTCAATGTCAGATCAAAGGTTTATGTGTCACCAAAACTGTGGTATCTCAGGGTCAATGTCATTGAAGCACAAGATGTGATACCAAGTGACAGAAACCGCCTGCCAGAGGTTTTTGTCAAGGCTCAGATGGGGAGCCAAGTGTTGAGGACCAAGATATGTCCAACTAGGACAACCACACCACTTTGGAAtgaagatttgatttttgtggcAGCTGAACCATTTGAGGAGAAGTTGACAATCACTGTGGAGGACCGCGTGCACCCTTCAAAAGATGAAGTACTTGGGAAGATAATCTTGCCATTGACCCTCTTTGAGAAGCGGCTAGACCACAGGCCAGTTCATTCGCGCTGGTtcaatcttgagaagtttggtTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTTAAATTTTCAAGCAGGATTCACCTAAGAATTTGCCTTGAAGGTGGATACCATGTCCTTGATGAATCCACTTTGTACTCAAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCTGTTGGCATACTTGAAGTAGGCATCTTAGGAGCACAAGGACTCCTCCCAATGAAGATGAGGGATGGCCGTGGCAGCACGGATGCATACTGTGTGGCCAAGTACGGTCAAAAATGGGTCAGAACCAGAACAATTCTTGACACTTCTAGTCCCAAATGGAATGAACAATACACATGGGAAGTTTATGATCCTTGCACCGTAATAACATTTGGGGTTTTTGACAACTGCCATTTAGGTGGAGGGGAAAAATCCACTGGTGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGAATTAGGCTCTCAACACTTGAAGCTCATAGGATATACACTCATAGCTACCCACTTCTTGTTTTGCACCCACATGGTGTCAAGAAAATGGGTGAGCTTCAGCTAGCAGTGAGGTTCACTAGCCTCTCACTGGCTAACATGGTTTACATTTATGGCCAACCCTTGCTGCCCAAGATGCATTACTTGCGCCCTTTCACAGTTAACCAAGTGGAGAATTTGAGGTACCAAGCCATGAACATTGTGGCTGTGAGACTTGGAAGAGCTGAACCTCCCCTCAGGAAGGAGGTGGTGGAGTACATGTTGGATGTTGACTCCCATATGTGGAGCATGAGAAGAAGCAAAGCTAACTTCTTCCGGATAATGTCACTTTTCTCTGGCATCATCACAATGGGGCAATGGTTTAGCCAAGTTTGCCATTGGAAGAACCCCTTCACATCAGTCCTAGTTCACATTCTCTTCCTGATACTCATTTGCTACCCTGAATTGATACTTCCAACTTTGTTCCTCTACATGTTCTTGATTGGCCTGTGGAACTATAGGTTTAGGCCTAGGCACCCACCCCACATGGACACTAAACTCTCATGGGCAGAAGCAGCTCACCCTGATGAACTTGATGAAGAGTTTGACACATTCCCAACTTCTAGATCACATGACGTGGTGAGAATGAGGTATGATAGGCTTAGAAGTGTTGCAGGAAGGATTCAAACAGTTGTTGGGGATATAGCAACACAGGGAGAGAGATTTCAGTCTCTATTGAGTTGGAGAGACACCAGAGCAACTAGCCTCTTTGTGGTGTTCAGCTTTTGTTCAGCTGTGGTTCTCTATGCAACACCCCCAAGAGTGGTGGCTATGGTAACAGGTTTGTATTATCTGCGACATCCAAAGTTTCGAAGCAAATTGCCTTCTGTTCCCAGCAACTTCTTCAAGAGGCTACCAGCTAGAACAGATAGCATGCTGTGA 3066 0.4478 MSFSFSRHRHKDEKDMKVVVEIIDARDLMPKDGEGSTSAFVEADFENQLSRTKLSQKNSTPLGITNYFSNWMQPNLTITKLLKSQSTTRGGLFRAETSLEGIRKPLISNFTKVPESKSKSNTTNLPHCPPPTIENIYLTDITSETNPNVEGPAFDTPKAITEEAEKVNSAAVTNFHTAAAQSSGIDTDQDPKGASIEITHQLHKHQVHQQPMISIKRRQRGAPVTMHSISPQVHPSSQDEDYNLRETDPQLGVRWPNAGRGWMGGGERFTSTHDLVEQTFYLYVRVVRAKDLPPSTLTSSCDPYVEVKLGNYKGRTKHIEKKTNPEWNQVYAFSKDRIQSSVLEVIVKDKDMVGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLEDWRGEGKVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYVSPKLWYLRVNVIEAQDVIPSDRNRLPEVFVKAQMGSQVLRTKICPTRTTTPLWNEDLIFVAAEPFEEKLTITVEDRVHPSKDEVLGKIILPLTLFEKRLDHRPVHSRWFNLEKFGFGMMEADRRNELKFSSRIHLRICLEGGYHVLDESTLYSSDQRPTARQLWKQPVGILEVGILGAQGLLPMKMRDGRGSTDAYCVAKYGQKWVRTRTILDTSSPKWNEQYTWEVYDPCTVITFGVFDNCHLGGGEKSTGGTAARDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAVRFTSLSLANMVYIYGQPLLPKMHYLRPFTVNQVENLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPFTSVLVHILFLILICYPELILPTLFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAAHPDELDEEFDTFPTSRSHDVVRMRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDTRATSLFVVFSFCSAVVLYATPPRVVAMVTGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1597 1021 Gene3D C2 domain 276 423 IPR035892 -
Ssu8g1597 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 443 598 IPR035892 -
Ssu8g1597 1021 SMART C2_3c 281 378 IPR000008 -
Ssu8g1597 1021 SMART C2_3c 608 718 IPR000008 -
Ssu8g1597 1021 SMART C2_3c 444 544 IPR000008 -
Ssu8g1597 1021 CDD C2B_MCTP_PRT_plant 281 407 - -
Ssu8g1597 1021 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 231 1021 - -
Ssu8g1597 1021 Pfam C2 domain 281 384 IPR000008 -
Ssu8g1597 1021 Pfam C2 domain 443 549 IPR000008 -
Ssu8g1597 1021 Pfam C2 domain 607 721 IPR000008 -
Ssu8g1597 1021 Pfam C2 domain 17 61 IPR000008 -
Ssu8g1597 1021 Gene3D C2 domain 431 577 IPR035892 -
Ssu8g1597 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 61 IPR035892 -
Ssu8g1597 1021 ProSiteProfiles C2 domain profile. 263 384 IPR000008 -
Ssu8g1597 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 743 IPR035892 -
Ssu8g1597 1021 CDD C2C_MCTP_PRT_plant 444 596 - -
Ssu8g1597 1021 Gene3D C2 domain 604 745 IPR035892 -
Ssu8g1597 1021 ProSiteProfiles C2 domain profile. 590 719 IPR000008 -
Ssu8g1597 1021 ProSiteProfiles C2 domain profile. 424 547 IPR000008 -
Ssu8g1597 1021 CDD C2D_MCTP_PRT_plant 608 738 - -
Ssu8g1597 1021 Pfam Plant phosphoribosyltransferase C-terminal 866 1021 IPR013583 -
Ssu8g1597 1021 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 231 1021 - -
Ssu8g1597 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 281 421 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1597 Ssu-Chr8 35222792 35226026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1597 17 1021 Lipid Metabolism Gene Families AT5G48060 63.498 0.0 1334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1597 - - lang:109333614 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2762 7 57186920 57189244 Ssu8g1597 8 35222792 35226026 ECH
Ssu4g1431 4 23820666 23822990 Ssu8g1597 8 35222792 35226026 ECH
Ssu8g1597 8 35222792 35226026 Ssu8g1597 8 35222792 35226026 ECH