Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1431 ATGCAGAGGCCTCCACCAGAAGATTTTCTGTTGAAGGAGACCAGTCCCCACCTTGGAGGGGGAAAGGTCTCTGGTGACAAGCTTACTAGCACTTATGACCTTGTTGAGCAAATGCAGTACCTCTATGTGAGGGTTGTGAAGGCTAAGGACTTGCCTGCAAAGGATGTCACTGGCAGTTGTGACCCTTATGTTGAAGTTAAGCTGGGGAACTACAAGGGCACAACTCGGCACTTCGAGAAGAAGACTAATCCCGAATGGAACCAGGTTTTTGCTTTCTCCAAAGACCGCATTCAGGCTTCCATTCTGGAGGTTACTGTGAAGGACAAGGATGTTGTGAAGGATGACTTCATTGGTCGTGTCTTGTTTGACCTCAATGAGATCCCGAAGCGTGTTCCCCCGGATAGTCCGCTGGCACCGCAGTGGTATAGGCTGGAGGACAGAAAGGGTGATAAGGCGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGGACACAAGCTGATGAAGCGTTTCCTGAAGCGTGGCACTCGGATGCTGCGACGGTTAGTGGGACTGATGCTCTTGCAAACATTAGATCAAAGGTGTATCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCGCAAGACTTGCAGCCGAGTGACAAGGGTAGATACCCTGAAGTTTTTGTGAAGGCTGCTCTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAGAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCTGCAGAACCATTTGAGGAGCCTCTGATTTTGAGTGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAGTCACTGGGGAGGTGTGCAATTCCTTTGCAGATGGTGGAGCGGAGACTGGATCACAAACCTGTGAATACCAAGTGGTATAATATTGAAAAGCACATTGTTATTATGGAAGgggaaaagaagaaggaaatcaAGTTTTCAAGCAAGATTCATATGAGGATCTGTCTGGAAGGCGGTTATCACGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCGAAACAGCTGTGGAAGTCCAGTATTGGAGTGCTTGAATTGGGGATATTGAATGCTCAGGGCTTGATGccgatgaaaaaaaaagatggtaAGGGGACAACAGATGCTTATTGTGTAGCAAAATATGGGCAGAAGTGGGTGCGGACAAGGACAATCATTGATAGCTTTGCACCCCGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTATTTGATAACTGGCATTTGCATGGTGGTGATAAGCCTGGAGCAAAAGATTCCAAAATTGGGAAGGTACGAATTCGTCTTTCCACCCTCGAGACTGACCGAGTCTATACACATTCCTATCCACTTCTAGTTCTTCATCCAAATGGGGTGAAGAAAATGGGTGAAATCCACTTGGCTGTAAGGTTTACTTGTTCGTCTTTGCTTAATATGATGCACATGTATTCACTGCCTTTGTTGCCTAAGATGCATTATATTCACCCATTAACTGTTAGCCAGCTTGACAATTTGAGGCATCAGGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCCGAGCCACCATTGAGAAAGGAGATAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCCAACTTTTTCAGGATTATGGGAGTTTTGGGTGGATTAATTGCTGTAGGAAAATGGTTTGACCAGATTTGCAATTGGAAAAATCCCATCACAACTGTTCTGATCCATATCCTGTTCATAATATTGGTCATGTACCCTGAGCTTATCTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGACCAAGGCACCCTCCTCACATGGACACGCGTCTCTCTCATGCGGATTCTGCACACCCAGATGAACTAGATGAAGAGTTTGACACATTCCCAACCACCAAACCTTCGGACGTTGTGAGGATGAGGTACGATCGGCTTAGAAGTATTGCTGGGAGGATACAGACTGTGGTTGGTGATCTGGCCACTCAAGGGGAAAGGCTGCAGTCTTTGCTCAGCTGGAGAGATCCAAGAGCCACTGCCCTCTTTGTGATTTTCTGTCTGGTTGCTGCCATTGTACTCTATGTCACTCCATTCCAAATTGTGGCTCTTCTCACTGGAATCTACATATTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTGCCTCTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2325 0.4555 MQRPPPEDFLLKETSPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRYPEVFVKAALGNQTLRTRISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVERRLDHKPVNTKWYNIEKHIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKKKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNWHLHGGDKPGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTKPSDVVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQIVALLTGIYILRHPRFRHKLPSVPLNFFRRLPARTDCML 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1431 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 504 IPR035892 -
Ssu4g1431 774 Gene3D C2 domain 188 333 IPR035892 -
Ssu4g1431 774 Gene3D C2 domain 349 496 IPR035892 -
Ssu4g1431 774 Gene3D C2 domain 24 162 IPR035892 -
Ssu4g1431 774 CDD C2D_MCTP_PRT_plant 365 491 - -
Ssu4g1431 774 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1431 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Ssu4g1431 774 PANTHER PROTEIN QUIRKY-LIKE 1 774 - -
Ssu4g1431 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Ssu4g1431 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Ssu4g1431 774 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 1 774 - -
Ssu4g1431 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Ssu4g1431 774 Pfam C2 domain 40 133 IPR000008 -
Ssu4g1431 774 Pfam C2 domain 365 474 IPR000008 -
Ssu4g1431 774 Pfam C2 domain 201 307 IPR000008 -
Ssu4g1431 774 SMART C2_3c 365 471 IPR000008 -
Ssu4g1431 774 SMART C2_3c 40 136 IPR000008 -
Ssu4g1431 774 SMART C2_3c 202 300 IPR000008 -
Ssu4g1431 774 CDD C2C_MCTP_PRT_plant 202 353 - -
Ssu4g1431 774 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Ssu4g1431 774 CDD C2B_MCTP_PRT_plant 40 164 - -
Ssu4g1431 774 ProSiteProfiles C2 domain profile. 347 472 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1431 Ssu-Chr4 23820666 23822990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1431 1 774 Lipid Metabolism Gene Families AT3G57880 90.323 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1431 - - gmx:100818371 1542.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1431 4 23820666 23822990 Ssu8g1597 8 35222792 35226026 ECH
Ssu4g1431 4 23820666 23822990 Ssu4g1431 4 23820666 23822990 ECH
Ssu4g1431 4 23820666 23822990 Ssu7g2762 7 57186920 57189244 PCT