Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1043 ATGCCCAGTGCTGAGATGCCCACAACATTGTCCTCTGAAACCAATTACCGGAGCAACGACCTCCAGTCGCTGGCACCACCGCCGGCAAAGAAGGTGTGTATGGACGAGATGCTCCAGAAGTACTGCGGCGAGTTCGGGCAGTGGCAGCTTAAGCACTTCACCCTCACCGGCCTTGCTTGGGTCTTCGTAGCCTTTCACACCATGGTCATGATTTTTGCCGACCATGAACCCCACTGGCGCTGCCTCGCCGGCTCCGCCGGTTCGGGTTGCACTGCCACCGCCGGGAACGTCTGTGGACTCAAACCGGGTTCGTGGGAGTGGGTCGGAGGCCGCGGCGCCACCACCGTGTCCGAGTGGGGTTTAGATTGTGGTGACATATTTAAGGTTGGGTTGGTCCGGGCCTTTTTCTTTGTCGGCTGGATGATCGGTGGTGGAGTATTTGGCCACCTCTCAGACTCCTTTCTTGGAAGGAAACGCACCCTTGGAGTGGTTTGTGCCCTAAACGCCATCTTTGGCTGCTTAACAGCACTGTCTCCTAACAATTGGATTTACGTCCTCCTCCGCCTCCTCACCGGCTTCAGCACCGGCGGCGTCGGCCTCTGTGCCTACGTTCTTGCGTCTGAACCGATTGGTCCCAAGAAGCGCGGCGCGGTGGGGATGTCCTCCTTCTACTTCTTGGCTGGCGGCATCGCACTTCTCTCTGGCATCGCTTACATCTTCCAAACATGGCGCTATCTCTACGTAGCTTCCTCCATCCCCTCCTTTCTCTACATTGTCCTTGTCCTTCCCTTTCTATCTGAGTCCCCAAGATGGTACCTCGTTCGTGGGAGAGTAACTGAGGCCATGAAGCTCATGTCCGCCATTGCTTCTTCCAATGGGAAGCACCTTCCCAATGACGTTTTCCTCGCACTTGATGAAGAAGCAAACAAAGATAGCTCATCATACCACGATGAAAATTCCAATAATGAATGCTTAGAAAACAAAGGCCCGCATGTTGCATCCATCGTGGACTTGGTTCGCTCCCCCATCACACGTGTACGACTGTTAATAGTGGTGGCACTTAACTTCCTTGGGGCTTTGGTGTACTATGGTCTTAGCTTGAACGTGGTCAACTTGAAAATCAACCTATACCTGAACGTGATGCTTAATGCGATGGGGGAGATGCCGGCGTTTGTGATAACAACGATGTTGTTGGACAGGTTCGGAAGGAAGCCGTTGACTGCGGCGACAATGTGGTTTAGCGGGTTCTTTTGTTTGATGGGGAGTTTGATGAAAAACGTTGGGGTGTGGAAGGTGGTGAGAATGGTGTGTGGTGTTTTGGGGATATTTGGGATGGCAGGGActtataatttgttgtttatttacACAACGGAGTTGTTTCCGACGGTGGTGAGGAACGTCGCACTTGGGTGTTCCACACAAGCAGCGCATATGGGAGCCATATTGGCGCCATTTGTGGTCATTTTTGGGGATGGTTACCATTTGCGTTATTCGCAGCATGCGGGATAG 1509 0.5249 MPSAEMPTTLSSETNYRSNDLQSLAPPPAKKVCMDEMLQKYCGEFGQWQLKHFTLTGLAWVFVAFHTMVMIFADHEPHWRCLAGSAGSGCTATAGNVCGLKPGSWEWVGGRGATTVSEWGLDCGDIFKVGLVRAFFFVGWMIGGGVFGHLSDSFLGRKRTLGVVCALNAIFGCLTALSPNNWIYVLLRLLTGFSTGGVGLCAYVLASEPIGPKKRGAVGMSSFYFLAGGIALLSGIAYIFQTWRYLYVASSIPSFLYIVLVLPFLSESPRWYLVRGRVTEAMKLMSAIASSNGKHLPNDVFLALDEEANKDSSSYHDENSNNECLENKGPHVASIVDLVRSPITRVRLLIVVALNFLGALVYYGLSLNVVNLKINLYLNVMLNAMGEMPAFVITTMLLDRFGRKPLTAATMWFSGFFCLMGSLMKNVGVWKVVRMVCGVLGIFGMAGTYNLLFIYTTELFPTVVRNVALGCSTQAAHMGAILAPFVVIFGDGYHLRYSQHAG 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1043 502 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 34 492 - -
Ssu8g1043 502 SUPERFAMILY MFS general substrate transporter 125 487 IPR036259 -
Ssu8g1043 502 Pfam Sugar (and other) transporter 128 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu8g1043 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 52 502 IPR020846 GO:0022857
Ssu8g1043 502 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g1043 502 Gene3D MFS general substrate transporter like domains 113 498 IPR036259 -
Ssu8g1043 502 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 34 492 - -
Ssu8g1043 502 MobiDBLite consensus disorder prediction 1 23 - -
Ssu8g1043 502 ProSitePatterns Sugar transport proteins signature 2. 190 215 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1043 Ssu-Chr8 17945183 17949063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1043 10 491 Organic Solute Cotransporters AT3G20660 61.711 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1043 K08202 - gmx:100794967 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1043 8 17945183 17949063 Ssu3g1944 3 61902985 61909938 PCT