Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1944 ATGCCAACCACGTCATCCTCTGATTCCACTAACCGGGACACAAAGTTCCGGTCACCGCTCCTGCCGCCTGCGGAGAGGCCCGTCGGAGTGTCGGAATCGGAGAAGCTATGCATCGACGAGATGCTGCAGAAGTATTGCGGCGAGTTCGGGCGGTGGCAGCTGAGGCACTTCGTGTTAACGAGTCTGGCGTGGGCCCTGGAAGCGTTCCACACGATGGTGATGATATTCGCGGACCGCGAACCGGAGTGGAGGTGCCTCGACGGCGCGGCCGGGTCGGGCTGTGACCCGGCCGCGAAGAGCGTATGTGGGCTCGAACCGGGTTCGTGGGAGTGGGTCGGAAGCTCCACCGTCACAGAGTGGGGCTTGTTTTGTGGCGACAAGTTCAAGATTGGGCTGGTTCAGGCCGTCTTCTTCGGCGGCTGCATGATCGGTGCTGGAATATTTGGCCACCTCTCAGATTCATTCCTCGGAAGAAAAGGTTCTCTCACAGTGGTCTGCGCCCTAAACACCGTCTTCGGTACCTTAACAGCCCTCTCCCCCAGCTACTCCTCCTACGTCTTCTTCCGCCTCCTCACCGGCTGCAGCACCGGTGGCGTTGGCCTCTGCGCCTTCGTCCTCGCCACCGAGCCGGTGGGCCCCAAAACCCGCGGCGTGGCCGGCATGTCCACCTTCTACTTCTTCTCCTCCGGCATCGCCCTCCTCTCCGCCATCGCCTACATCTCCCCCACGTGGCGCAAACTCTACATCGCCTCCTCCCTCCCCTCCCTTCTCTTCCTCCTCGCCGCCCTCCCCTTCATCTCGGAGTCCCCGAGATGGTACCTCGTACAAGGAAGAACCAACGAAGCCACGAAAATCATGTCCACCATCGCCGCCTCCAACGGTAACCACCTTCCACAAGGGGTTCTTCTCACCCTCGACCAACAACAACCACTACCAGAAGCCACTCCTTTAAATGAATCTCAATATATTAAGAGATTAGTCTCTATCTCTCAATTAAAAGATACTTCAAGTTCATCCAAAGAATCATCATCGTGCCACGTGGCAGTAATGGGTCAATATCTTAAGAAATTAGTCCCTGTCTCTCAATTAGAAAATACTCCAAGTTCACTTAAAGAATCATCACCACCATGCCACGCGGCAGTGACGGGTTCTCTTCTTGACGTGATTCGCTCACCAGTGACACGCGCGCGTTTGGTTCTCGCTGTGGTTATCAACTTCCTATGCTCCGTGGTGTACTATGGTTTGAGTCTCAACGTCGTGAACCTCGAGACCAACCTTTACCTCACCGTGATACTTAACGCCGTGGCGGAGATGCCGGCGTTTATGATAACGGCGATGTTGCTGGACCGGTGGGGGAGGAAGCCGTTGACCATAGTGACGTTATGGTTCAGTGGCGCGTTTTGCTTCGCGGGGAGTTTGGTGAACAACGTCGGGGTGTGGAAGGGTGTGAGAATGGTGTGTGGGATTTTGGGGATTTTTGGGATGGCGGGGACGTATAATTTGCTGTTCATTTACACGGCGGAGCTGTTTCCGACGGTGGTGAGGAACACCGCGCTTGGGTGCGCCACGCAGGCGGCGCAGATGGGGGCCATATTGGCGCCGCTCGTCGTCGTTTTGGGGGGGTCGTTGCCGTTTATGGTGTTTGCTTTGTGCGGAATGGGTGGGGGACTTTTCGCGTATTATCTCCCAGAGACGCTGAACCAACCTCTGTATGACACATTAACGGGAATGGAGGCCAAGGAAAACCCTCAAAATAGTGTTACCTCTAATGTATGA 1776 0.5586 MPTTSSSDSTNRDTKFRSPLLPPAERPVGVSESEKLCIDEMLQKYCGEFGRWQLRHFVLTSLAWALEAFHTMVMIFADREPEWRCLDGAAGSGCDPAAKSVCGLEPGSWEWVGSSTVTEWGLFCGDKFKIGLVQAVFFGGCMIGAGIFGHLSDSFLGRKGSLTVVCALNTVFGTLTALSPSYSSYVFFRLLTGCSTGGVGLCAFVLATEPVGPKTRGVAGMSTFYFFSSGIALLSAIAYISPTWRKLYIASSLPSLLFLLAALPFISESPRWYLVQGRTNEATKIMSTIAASNGNHLPQGVLLTLDQQQPLPEATPLNESQYIKRLVSISQLKDTSSSSKESSSCHVAVMGQYLKKLVPVSQLENTPSSLKESSPPCHAAVTGSLLDVIRSPVTRARLVLAVVINFLCSVVYYGLSLNVVNLETNLYLTVILNAVAEMPAFMITAMLLDRWGRKPLTIVTLWFSGAFCFAGSLVNNVGVWKGVRMVCGILGIFGMAGTYNLLFIYTAELFPTVVRNTALGCATQAAQMGAILAPLVVVLGGSLPFMVFALCGMGGGLFAYYLPETLNQPLYDTLTGMEAKENPQNSVTSNV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1944 591 Pfam Sugar (and other) transporter 127 292 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu3g1944 591 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 38 316 - -
Ssu3g1944 591 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 372 581 - -
Ssu3g1944 591 Pfam Major Facilitator Superfamily 412 563 IPR011701 GO:0022857|GO:0055085
Ssu3g1944 591 ProSiteProfiles Major facilitator superfamily (MFS) profile. 56 567 IPR020846 GO:0022857
Ssu3g1944 591 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g1944 591 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 38 316 - -
Ssu3g1944 591 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 372 581 - -
Ssu3g1944 591 MobiDBLite consensus disorder prediction 1 27 - -
Ssu3g1944 591 SUPERFAMILY MFS general substrate transporter 122 570 IPR036259 -
Ssu3g1944 591 ProSitePatterns Sugar transport proteins signature 1. 444 460 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu3g1944 591 Gene3D MFS general substrate transporter like domains 113 578 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1944 Ssu-Chr3 61902985 61909938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1944 5 591 Organic Solute Cotransporters AT3G20660 59.661 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1944 K08202 - gmx:100805613 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1043 8 17945183 17949063 Ssu3g1944 3 61902985 61909938 PCT