Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1026 ATGATTGAGGGTGAATTTGAGGAATCGTTGATCGTTGTTGTGTTTTGGGTAGGTGCTATTTTGGTGTGTGTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGgtaataatggtggtggtggcagaaCCAACGGCTTCATTCCTAGTTCTTTTCGTGCTCTCTCTAGCTACCTCAGGATTGTTTCCTCTGGTGCTTCCACGGTTGCACGTTCTGCTGCATCGGTTGCTTCATCGATTGTGGAGAGGGATGATGACCCTGACCATGATCAGgTTATCTGGGCTGGATTTGACAAGTTAGAGGGTGAGGGTGAAGTTATTCAGCAAGTACTTCTTCTAGGCTATCGATCTGGCTTCCAGGTTTGGCATGTTGATGAATCAAATAATGTCCGAGACCTAGTTTCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCAATCGCATCAAAGAGATCAGAAGACAGGTATGCAAACAGCCGCCAACTGTTGGTAGTTTGTACTGATGGTTTCTTTGCTGGAGGTAGCAATGTTCAGGATGGTTTGACCACCCCGTATAATGGGAGCACTTCAAACTCCCATGACCAAATGAATGGAAGCTATCTGCCAACTACTGTTCAGTTTTATTCTATGAAATCCCAATCATACGTTCATGTAATGAAGTTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAATCCACTCAGATACACTGTTTCGATGCTACCTCATTAGAAAGGGAATATACTTTACTTACCAATCCTATAGTCATGAGTTGCCCTGGTTCTGGAGGCATAGGTTATGGACCACTTGCGGTGGGTCCGCGATGGCTGGCTTATAGTGGAAGTCCAGTTGCAGTCTCCAATTCAGGACATGTCACCCCACAACATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCTAATGGGAGCTTGATTGCACACTATGCAAAAGAGTCCAGCAAGCATCTTGCTTCTGGTATTGTGACCCTTGGAGATATGGGGTATAAGAAAATTTCCAGATACTGCTCTGATAACAATGGTTCATTACAATCTGTAAATTCTGGCTGTAAAGGCAATGGAACCATTAATGGCCATTCAACAGATGCAGATAACATTGGAATGGTTATTGTTAAAGATATTGTCTCAAAAAAAGTTATTGCCCAATTCCGGGCGCACAAGAGTCCCATTTCAGCATTATGCTTTGATCCTAGTGGCACCATATTAGTGACTGCTTCCATTCAGGGTcataatataaatgtttttaagataATGCCTGCACGTGAAAATTTGTCAGCATCTGATACTGGCCCTTCTTATCTTCATTTGTACAGGCTGCAGCGTGGCTTTACAAATGCGGTTATACAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCACTTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCAGTCCTTTGATGATGGTTTTACGGCAAAAAATAGTGGATTAGGATCTACAACTAATCACGCAGTTTGCTGGTCTCATAGTTCAGCCATGCAAATGCCTAATCAGCAGAGCCTGTTTGTGGCTGGCCCTCCAATCACACTTTCTGTCGTAAGCAGAATTAGGAATGGAGCTAATGGCTGGAGAGGCACTGTAAGTGGCGCTGCTGCAGCTGCAACTGGTAGGAAAAATGCCCTTTCTGGGGCTATTGCTTCATCTTTCCGCAACTATAAAAGCACTGAAGGGAACCATTCAAAGGCAAAGTATCACCTCTTGGTCTTTTCCCCCACTGGTTCCATGATTCAATATGCTCTGCAGACATTAATTGGCCAAGATTCAGCTGTTGTTTCTGGACTGGCTCCTGCTTATGAATCCATGCCACAGGCTGATGCAAGACTAGTAGTTGAGGCTATCCATAAATGGAATATATGTCAGAGTCATAGTCGGAGAGAGCGAGAAGATAATGTAGACATATATGGTGAGAATGGAATTTCagaagttaataaaatatatccagAGGAAGTGGGGGAGAACATTATCAGCCCAAAAATCAAGAATGGGTTCATGAAAGTGAGTCCCTCTCTTGAGGAGGAGCATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCTCAGACTCCATTGTGGGCAAAGCTAGAgatatattttcattcaatgtTGAATGAGTCTATCATAATGGAAGAAGAAGCTGCCTCAGGAGGTGAATTTGAGATTGAAAGGATTCCAACCTGCATGATTGAAGCTAGATCAAAAGACTTGGTACCGATTTTCGACTATATTCAGACCCCAAAATTACAACAAACAAGGACTCCTGCTATGGATAGCAAGACAAATGAACAACTGTTGCATCGCAGTTCGCGGCCTTCCAGTAATGGCAGGATTTCACCCAGGACTATTTTGGGATCTCCTGAGTGTGTGAATAATGGTGGTGATGCTGTTACTGAATTTAAAAGTGGGATTGAAGGAACTGAGTGGGATAATCATGTGGTGCCATCTGAAACTGTGAGCTTTGTAAATAACAATGATACCCTTAAACCAAATATTCAGCATGAGATTGTAAATAATAGAAGGGAGCACTTAAACAACGGGGCTCATCTCATGTTTGTAAATAGTGACAGAAAGCCTGAAAATGAAGAATCATTTTGA 2727 0.4144 MIEGEFEESLIVVVFWVGAILVCVVMGMRNDAQKQQLLHQGNNGGGGRTNGFIPSSFRALSSYLRIVSSGASTVARSAASVASSIVERDDDPDHDQVIWAGFDKLEGEGEVIQQVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDRYANSRQLLVVCTDGFFAGGSNVQDGLTTPYNGSTSNSHDQMNGSYLPTTVQFYSMKSQSYVHVMKFRSVVYSVRCSSRIVAVSQSTQIHCFDATSLEREYTLLTNPIVMSCPGSGGIGYGPLAVGPRWLAYSGSPVAVSNSGHVTPQHLTPSASFPGFSSNGSLIAHYAKESSKHLASGIVTLGDMGYKKISRYCSDNNGSLQSVNSGCKGNGTINGHSTDADNIGMVIVKDIVSKKVIAQFRAHKSPISALCFDPSGTILVTASIQGHNINVFKIMPARENLSASDTGPSYLHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSFDDGFTAKNSGLGSTTNHAVCWSHSSAMQMPNQQSLFVAGPPITLSVVSRIRNGANGWRGTVSGAAAAATGRKNALSGAIASSFRNYKSTEGNHSKAKYHLLVFSPTGSMIQYALQTLIGQDSAVVSGLAPAYESMPQADARLVVEAIHKWNICQSHSRREREDNVDIYGENGISEVNKIYPEEVGENIISPKIKNGFMKVSPSLEEEHHLYISEAELQMHEAQTPLWAKLEIYFHSMLNESIIMEEEAASGGEFEIERIPTCMIEARSKDLVPIFDYIQTPKLQQTRTPAMDSKTNEQLLHRSSRPSSNGRISPRTILGSPECVNNGGDAVTEFKSGIEGTEWDNHVVPSETVSFVNNNDTLKPNIQHEIVNNRREHLNNGAHLMFVNSDRKPENEESF 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1026 908 SUPERFAMILY WD40 repeat-like 213 500 IPR036322 GO:0005515
Ssu8g1026 908 MobiDBLite consensus disorder prediction 794 833 - -
Ssu8g1026 908 Gene3D - 112 548 IPR015943 GO:0005515
Ssu8g1026 908 Pfam Breast carcinoma amplified sequence 3 548 782 IPR022175 -
Ssu8g1026 908 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 28 884 IPR045142 GO:0006914
Ssu8g1026 908 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 28 884 - -
Ssu8g1026 908 SMART WD40_4 399 439 IPR001680 GO:0005515
Ssu8g1026 908 SMART WD40_4 221 256 IPR001680 GO:0005515
Ssu8g1026 908 SMART WD40_4 455 496 IPR001680 GO:0005515
Ssu8g1026 908 MobiDBLite consensus disorder prediction 794 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1026 Ssu-Chr8 17628649 17635050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1026 - - gmx:100784596 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1026 8 17628649 17635050 Ssu8g1026 8 17628649 17635050 ECH
Ssu8g1026 8 17628649 17635050 Ssu3g1986 3 65064794 65073087 PCT