Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1986 ATGATTGAATTTAAGAGTGAATTTGAAGAATCAGTGGTGACCcttttgttgttgtggttgtgggTAGCTgttattttcatctctttgaTTTTTGGGATGAGTAGGAATGATGGCCAGAAACAACAGCACCTTCTTCATGGAGGTGGTGTTGCTGCTGCTGGTAGTGATAGTGGTCGCAGAACCAACAGCAATGGCTTTATTCCCAGCTCCTTTCGTACTCTATCCGGTTACCTGAAGATTGTTTCATCCGGTGCTTCCACTGTTGCTCGGTCTGCGGCAGCCTCTTTTGCATCGTCGATTTTGGATAAGAATGATGATGCTGACTGTAATCGGGTTATTTGGGCTGGGTTTGACACGTTAGAGGGCCAGGGAGAAGTCATTCGGCAACTACTTCTTCTAGGCTATTCTTCTGGCTTCCAGGTTTGGGATGTTGATGATTCAAATAACGTCCATGACCTAGTTTCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCATGTCCAATTGTATTGAAGAGACCAGAGGACAAGTTTGCAGACAAGTGTCCATTGTTGGTAGTTTGTACAGATGGTTTGTTGGCCGGAGGAGGCAAAATACAAGATGGGTTGGTTGCCACTTGCAATGGGGGTTCTTTAAACCGTCATGACCAAGGGAATGGAAACTATCTACCAACTACTGTTCAATTTTATTCTATGAGGTCCCAATCATATGTTCATGTACTAAAGTTTAGATCAGTTGTTTATTCTGTAAGATGTAGTTCTCGAATAGTTGCTGTTTCTCAAGCCACTCAGatACACTGTTTTTCTGCCACAACTTTAGAAAGAGAGTATACTTTACTTACCAATCCTATAGTCACAGGATGTCTTGGTTCTGGAGGCATTGGCTTTGGACCACTTGCAGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCTGCTGCAACAGCCACTTCTGGGCGTGTCAGCCCCCAGCATTTGACACCTTCTGCCAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGTCCCTTGGAGATATGGGGTATAAGAAACTTTCCAGATACTGCTCTGAACTTCTCCCAGATGGCAGTGGTTCTATACAATCTGTAAATTCTAGCCCAAAAGGGAATAGAATCGTTAATGGCCATTCAACAGATGTGGATAACATTGGGATGGTCATTGTAAGAGATATAGTCAGTAAAAATGTTGTTGCCCAATTCCGGGCACACAAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATATTAGCGACTGCTTCTGTTCAGGGGCATAAcattaatgtttttaagataATGCCTGGATATGAGAGAGTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTATAGGCTACAACGTGGCTTGACAAATGCAGTTATTCAAGATATCAGTTTTAGTGTTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTGTcatatgacaataatttaacagaaaaaaatgGTGGATTGGGTGTTATGACTAATCAAGCAGTTCGTTGGCCTCATAATTCAGCCGTAGAAATTTGTAAACCGCAGAGTCTCTGTGCTACTGGTCCTCCAATTACACTTTCTGTTGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAAGCACGGTAACTGGTGCTGCTGCAGCTGCAACAAACAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCTGTAACTTTGAAGGCAGCAGTACCTTGTGTGTTAATGGGAACTATTCCGAGGAAAAGTATCATCTGTTGGTCTTTTCACCCACTGGTTCTATGATACAATATGCTCTGCAGACAATTAACAGTCAAGATTCAGGTGTTGTTTCTGGATTGACACCTGCATATGAATCCGCCCCAGTGACTGATGCAAGAGTAGTAGTTGAGCCTATCCAGAAATGGAATATAAGTCGGAGACATAGTTGGAGAGAGGGAGAAGATAATATTGACATATACGGAGAGAATGGAGTTTCAGACTGCAATAAAGTATTTGCAGAGGAAGTGAAGAAGGATAATATCAATGGCCCAAAAATCAAGAATGTAGCCCTGAAAGTGAACTACAGTTCTGAGAAAGAgcataatttgtatatttcagAAGCTGAACTGCAAATGCATCAAGCTTATACTCCATTGTGGGCAAAGACTGatGTATATTTTCATTCAGTGGGTAAAGAGGCTACTATGATGATGGATGAAGAAGCTGCTTCGGGAGGGGAATTTGAGATTGAAAAGATTCCAACTCGTGTGATAGAAGCTAGGTCAAAAGACTTGGTTCCAATTTTTGACTATACTCAGATCCCAAAGTTTCAACAAATAAGGACTCCTGATGTGGATAACAagttaaatgaacaaattttgcATCAAAGTTCCAAGCTGTTTGAAAAGGGAAGGATTTCACCCAGGAGTTTTTTGGGACCTACTGATTGTATGACTAATTCTGGTGGAACTGTTACTGAATTTAAAAGTGGGATTCAAGGAAATGAGTGGAATGATCATTTGATTCCAGCAGAAACAAAgagttttgtaaataacaataacaccCTTAAACCAAATACTAGGCAAGAGATTGTAAATAATAGAAGAGAGCACTTCAACATGGATGCTCAACACGTGTTTGTAAACAGTGACAGAAAATGCCTGAAACTGGAGAATCACTGcgaagaagaagatgaatttGATTGa 2829 0.398 MIEFKSEFEESVVTLLLLWLWVAVIFISLIFGMSRNDGQKQQHLLHGGGVAAAGSDSGRRTNSNGFIPSSFRTLSGYLKIVSSGASTVARSAAASFASSILDKNDDADCNRVIWAGFDTLEGQGEVIRQLLLLGYSSGFQVWDVDDSNNVHDLVSRHDGPVSFMQMVPCPIVLKRPEDKFADKCPLLVVCTDGLLAGGGKIQDGLVATCNGGSLNRHDQGNGNYLPTTVQFYSMRSQSYVHVLKFRSVVYSVRCSSRIVAVSQATQIHCFSATTLEREYTLLTNPIVTGCLGSGGIGFGPLAVGPRWLAYSGSPAATATSGRVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVSLGDMGYKKLSRYCSELLPDGSGSIQSVNSSPKGNRIVNGHSTDVDNIGMVIVRDIVSKNVVAQFRAHKSPISALCFDPSGTILATASVQGHNINVFKIMPGYERVSASDAGPSYVHLYRLQRGLTNAVIQDISFSVDSRWIMISSSRGTSHLFAINPQGGPVNILSYDNNLTEKNGGLGVMTNQAVRWPHNSAVEICKPQSLCATGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGAIASSFCNFEGSSTLCVNGNYSEEKYHLLVFSPTGSMIQYALQTINSQDSGVVSGLTPAYESAPVTDARVVVEPIQKWNISRRHSWREGEDNIDIYGENGVSDCNKVFAEEVKKDNINGPKIKNVALKVNYSSEKEHNLYISEAELQMHQAYTPLWAKTDVYFHSVGKEATMMMDEEAASGGEFEIEKIPTRVIEARSKDLVPIFDYTQIPKFQQIRTPDVDNKLNEQILHQSSKLFEKGRISPRSFLGPTDCMTNSGGTVTEFKSGIQGNEWNDHLIPAETKSFVNNNNTLKPNTRQEIVNNRREHFNMDAQHVFVNSDRKCLKLENHCEEEDEFD 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1986 942 Gene3D - 124 516 IPR015943 GO:0005515
Ssu3g1986 942 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 47 910 - -
Ssu3g1986 942 Pfam Breast carcinoma amplified sequence 3 567 808 IPR022175 -
Ssu3g1986 942 SUPERFAMILY WD40 repeat-like 130 518 IPR036322 GO:0005515
Ssu3g1986 942 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 47 910 IPR045142 GO:0006914
Ssu3g1986 942 SMART WD40_4 236 271 IPR001680 GO:0005515
Ssu3g1986 942 SMART WD40_4 474 515 IPR001680 GO:0005515
Ssu3g1986 942 SMART WD40_4 418 458 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1986 Ssu-Chr3 65064794 65073087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1986 - - gmx:100778343 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1986 3 65064794 65073087 Ssu3g1986 3 65064794 65073087 ECH
Ssu8g1026 8 17628649 17635050 Ssu3g1986 3 65064794 65073087 PCT