Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1021 ATGCAAGTGCGTTACTCCTTCGTTCGAAATCTAAGCACTGGGTTGCGTTCACGTTCAGCCACCAAACGCGGCACTACCAAACctcaatcttcttcttcttcttcttcaagttcAACCTCTTCATTCCTTTCAGGACTTGATGAGAATTTCACGCTCTCAAGCCTCAAGCTTAAGCGACCCTCTGATTCAGGTGATTCGTCTAATGGGGTGTTTAAGCAGATTTCTTCTATTTTCCACGCTGGTAAGTCAGTTAAGAAACCTGATTCTGACGAAATTGATGGTGCAAAGGAGTTTGAAAGAGTGCCAAATCTATCATCGTTGTCGAGCGTATCTCAAAGCAATATATTACTGCAACGGAAAGAGCAATCTcgtcaaaagaaacaaaaatgtgtGTTTGAATTCACTCAAGAAAAACGTTTTCAGAAGTTAATTGAAGTCTGTGCAAAGATACTAGGACCAGAGGCTACCCTTGAGTTGTTTGGTAAAGTGGGACGAGAACCAAGTGTGAAAGGATACAATGCATTGGTAGAAATGTGCATAGATAACGCCAGGGGAACTGATGATGAAGACATTGCAATAGAAGAACTGGGGAAggtttttaacctttttaaatcAATGAGGGAACAAGGTTTAGAGCTACAAGAGCAAACATATCGCCCActtcttttgtatataattgACATGCGTATGGTTGAGGAGTTTCAATTTTTCTATGTTGTTATCAAAGATGAGAATCCCAGTTCAGTTACAAGACTGGGTTACTATGAAATGTTGCTGTGGTTAAAAGTTAATAACGACGAAAAGATTCAGGGTATTTGTAACTATATTGCAGAGAATGATGGTGAGGACACATCTGATATACGAGAAAGTTATTTATTGGCTCTTTGTGAAAGTGAACGGATGGAGGAGATTTTGAAGATGTTGGAAATCATAGGCATAAAAAACCTTTCATCTACTAAATCCGTAGCAAAGATATTTCAGGCATTAGGAAGATTACTATTGGAACCTGTAGCAGAGAAGTTCCTTTTAGACTTCAAAACAAGTGATCATGAAGCAGATAATATTACAAACTTCATTGCTAGTTATGCTGTTAGCATTCCAAATTTATCAGTAAGAAATATCTTACAAATGGCGCTGGTTGAGgatgtcataaaaaaattcaaagatttGCACCAAAGACTAGAAGTTTCACCTTCATCCTCATCATACGAGAAGCTCATTTTACATAGCTGTGCATTGCTCAAGGTGCATATGGCGCTTGATATTGTCGATGAAATGTGTGAAGCAGGCTTGACTTTATCAACCAAGGTGTTACACTCAATATTACAAATTTGTGACAAAACATCTGAATATAATTTGCTTGAAGGTGCATATAAGATGCTTGAAGATTTGGAAGAGTTAAATTTGAAGCCAGCGGCAGGCATGTACAATGTCATAATGGCAGAATGTCTTCGAGAGAAAAACATTAGTGATGGGGTGAGGGTCCTTGAGCACATGCAATGTGCTGATATAAAGCCTGATTCACAAACTTTCAGCTACCTGATTAGCAACTCTAAAACTAAAGAGGATATAGTGAAGTATTATGAAGAACTGAAGCAGTCAGGAATAGTAGCTACAAAGCAAATTTTCATGGCACTTGTAAATGCTTATGCTGCTTGTGGACAGTTGGAGAAAGCAAAAAAGGTAATCTTAGATCCTTTGATACCACCGAAGAGCTTGAATCAAGTCAAGGCTGTTCTTGTCTCAGTACTTGCATCACATGGGCAATTGTCTGaggcttttgttatttatgagGAAATCAAGCAAGTTGGACACAAGTTGGAGGCAAAAGATGTTATGAGTCTCATTGAGCACACTCATTCCGATGGAGAGTTGGATAGGTTGCTTCTGCTACTTGAGGAATTGGATGATACAGACTATTGGAATGATGCTTGCTGCAGAATCATCTTGTATTGTATTTGGAATAAGCATTTAAGTTCTGCTGTTGAATTGTGTAATCTGCTCAAGGATAAGTTCCAAAGTGATGAGCAAGTTATGGAAGTTCTCTTTGATAAGGTATTTTCTCTGATTGAAGAGTCAGAGTCCAGTCATTGGCACACGTGCCTCGAGTTGCTTTCGGAAATCAAGGATAAGGTTGGACTTTTGCCTTCACAGAAATGTCACGATTCTCTACTACGTGCTTGTGCTAATGCCAATGATTTGCATAATACTGAATGA 2217 0.3694 MQVRYSFVRNLSTGLRSRSATKRGTTKPQSSSSSSSSSTSSFLSGLDENFTLSSLKLKRPSDSGDSSNGVFKQISSIFHAGKSVKKPDSDEIDGAKEFERVPNLSSLSSVSQSNILLQRKEQSRQKKQKCVFEFTQEKRFQKLIEVCAKILGPEATLELFGKVGREPSVKGYNALVEMCIDNARGTDDEDIAIEELGKVFNLFKSMREQGLELQEQTYRPLLLYIIDMRMVEEFQFFYVVIKDENPSSVTRLGYYEMLLWLKVNNDEKIQGICNYIAENDGEDTSDIRESYLLALCESERMEEILKMLEIIGIKNLSSTKSVAKIFQALGRLLLEPVAEKFLLDFKTSDHEADNITNFIASYAVSIPNLSVRNILQMALVEDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLKVHMALDIVDEMCEAGLTLSTKVLHSILQICDKTSEYNLLEGAYKMLEDLEELNLKPAAGMYNVIMAECLREKNISDGVRVLEHMQCADIKPDSQTFSYLISNSKTKEDIVKYYEELKQSGIVATKQIFMALVNAYAACGQLEKAKKVILDPLIPPKSLNQVKAVLVSVLASHGQLSEAFVIYEEIKQVGHKLEAKDVMSLIEHTHSDGELDRLLLLLEELDDTDYWNDACCRIILYCIWNKHLSSAVELCNLLKDKFQSDEQVMEVLFDKVFSLIEESESSHWHTCLELLSEIKDKVGLLPSQKCHDSLLRACANANDLHNTE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1021 738 PANTHER OS02G0132600 PROTEIN 454 737 - -
Ssu8g1021 738 PANTHER OS02G0132600 PROTEIN 72 453 - -
Ssu8g1021 738 Pfam PPR repeat 543 563 IPR002885 -
Ssu8g1021 738 Pfam PPR repeat 580 604 IPR002885 -
Ssu8g1021 738 Gene3D Tetratricopeptide repeat domain 135 335 IPR011990 GO:0005515
Ssu8g1021 738 Gene3D Tetratricopeptide repeat domain 372 520 IPR011990 GO:0005515
Ssu8g1021 738 Pfam PPR repeat family 475 516 IPR002885 -
Ssu8g1021 738 Gene3D Tetratricopeptide repeat domain 521 703 IPR011990 GO:0005515
Ssu8g1021 738 PANTHER OS02G0132600 PROTEIN 72 453 - -
Ssu8g1021 738 PANTHER OS02G0132600 PROTEIN 454 737 - -
Ssu8g1021 738 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Ssu8g1021 738 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1021 Ssu-Chr8 17554380 17565205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1021 380 635 Glycosyltransferase AT1G05670 20.833 2.02e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1021 - - gmx:100306302 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1021 8 17554380 17565205 Ssu8g1021 8 17554380 17565205 ECH
Ssu8g1021 8 17554380 17565205 Ssu3g1988 3 65153203 65187129 PCT