Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1988 ATGCGCGCCCCCACCGTAAGAAACCTATGCACCCTCAGCGCCCTCTTCCGCTCACAGTTGAAAACCCGCAAAGCCAACACCAACGTTGTACCCTTCAGAAAGCCTTCTTCTGAGTCCGAACACGATTTGCGTTCCGAACTGCACCTCTCAGAACTCGACCTCGCTCGTGACTCTTCCCAAGGGGGTTTGGTTGACGAAGATGCGGATGCAACTCAGCTTTCTGCTATATTGTGCGCTACGCAGGACAAGAGGTCTGGTTCGGAGgaagttgatgatgatgaaaaagGGAAAAGTGCAGTAGATATTCCATGGATACCGGACCTGTCTCATGGTAATTTATTGGCGAAACGGAAGGAGGTTGCTCGCGAGAGGAAACAAAAGTGGATTTATAAGTACACGAGTGATGACCGATTCGATAGGTTAATTAAATTGTGCGCAGATAAACTAGGAACTGGAAAGACTGTTAATGTGTTTGGTCACTTGGGTCGAGAAACAGGTGTGAAAGAGTACAATGCATTGATAAAAATGTGCATAAAGAAGGCTAGGGCTACTGACGATGAATTCATTGCTGTAAGAGAAATGAGTAAGGCTTTTCACCTTTTCAAATCAATGATGGATCTTGGGTATCCAGTAGAAGAGCAAACGTATGGTCCACTTCTTCGGTATATAATTGATATGGGTTTGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGAGAATCCTGGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTAAGAGTTGACAATGAAGAAATGATCCGGGATATTTGTGAATATGTTACAGTTGAATGTAGTGAAGACACTATAGCTTTGCGAGAAAGTTACTTGATGGCACTTTGTGAAAGTGATCGGAAGATGCAAATTTTGGATGTGGCGAGGAATATAGACATCACAAAGCTTTCATCTGCAGAATCTATTGCAAATATATTCCAATCATTAGGCAGGCTACAGATGGAATCTGTTGCGGATGATTTACTTTTGGATTTGAGAGCACGTGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAACATTCCAAATTTAGCGGTTGAGGATATCATCCCAAAAATCAAGAATATGCATGAATTACTGGAAGTGTTGCCTTCATCCTCATCATATGAAAAGCTCATTTTGCATTGCTGTGGCTTAGACAAGGTGGGCGTCGCTCTTGATATTGTTGAACAAATGTGTGAAGCTGGCTTTACCTTGTCAACTGAGGTGTTACAATTCATATTACAACTGTGTGAGGAatcttatgaatatattttgGTCCATCAAATCTATTCCATAATATGTCACTATCAGTTGGAGTTGAATGGTGAAATATGCAGGTGTTTGGTACACTTTTGTGTGAGGATGAAAGATTTTGAAGGTGCATACAAGATGATTGGTGACTTAGAGGAAATGAATTTCAAGCCTACGACAAACATGTACAATGCTATAATGGCAGGATCTTTTCGAGAGAAGAACATCAGTGGTGGGTTGAGGGTCCTCAAGCACATGCAAGGTGCCAACGTAAAACCTGATTCTCAGACTTTCTACTATTTGATTTGCAATTGTCAAACGGAAGAGGATATAATCAAGTATTGTGAAGAAATGAAGCAATCTGGAGTCCAAgctacaaaacaaatttttatggCCCTTATTAATTCGTATGCAGCTTGTGGAAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATCCAAACATACCAAACAAGAGCTTAAATGAAATCAAGAGTGTACTTGTCTCAGCTCTTGCATCACATGGGCAATTGTCCGAGGCTCTTCTTGTATATGAGGAGATTAAGAAAGCTGGACATAATTTGGAGCCAAAAGCCGTTATAAGTCTGATTGAGGAGTTCACTCAATTCAAAGGGGAGTTGGATGGACTGCTGCTTCTACTTAAGGAAGTGAGTGATCTAGACTATTGGGTTGATGGTTGTTTCAAGGTTATCATGTATTGTATACAGAACAAGAATTTGAGTTCTGCTATACTCTTGTTCAAACAACTCAAGGATAAGTTTGAAAATGATGAAATAGTAATGGAAGCTCTCTTTGATGCGGTATTTTCTCTAATTGCAGCATCCAAGTCCACTCATTTACAGATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGCCTTATGCCTTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAATAATGCCCGCTTGATTTGGAGAGAATACGAGGTTGCTGGATTTCCTTACAATGTATTAAGTTACTTAAGAATGTATCAGGCACTTTTGGCGGCAGGAGATGATAGATCTGCTCACTTTATGCTTAAGAAAATTCCACAAGATGATGCCGAGGTTTGTTCTGTCATCATAGCATGTCAGGAAACTTACAATGGTCTTAATTCTATgggagagaagaaaaagcaaggaaaaagaaaaaagaaagaaaagagtaagACTTGA 2529 0.3891 MRAPTVRNLCTLSALFRSQLKTRKANTNVVPFRKPSSESEHDLRSELHLSELDLARDSSQGGLVDEDADATQLSAILCATQDKRSGSEEVDDDEKGKSAVDIPWIPDLSHGNLLAKRKEVARERKQKWIYKYTSDDRFDRLIKLCADKLGTGKTVNVFGHLGRETGVKEYNALIKMCIKKARATDDEFIAVREMSKAFHLFKSMMDLGYPVEEQTYGPLLRYIIDMGLVQEFQLFSDVIKAENPGSASRLGYYEMLLWLRVDNEEMIRDICEYVTVECSEDTIALRESYLMALCESDRKMQILDVARNIDITKLSSAESIANIFQSLGRLQMESVADDLLLDLRARDHDADNISNFIVSYAVNIPNLAVEDIIPKIKNMHELLEVLPSSSSYEKLILHCCGLDKVGVALDIVEQMCEAGFTLSTEVLQFILQLCEESYEYILVHQIYSIICHYQLELNGEICRCLVHFCVRMKDFEGAYKMIGDLEEMNFKPTTNMYNAIMAGSFREKNISGGLRVLKHMQGANVKPDSQTFYYLICNCQTEEDIIKYCEEMKQSGVQATKQIFMALINSYAACGKLEKAKQVVLDPNIPNKSLNEIKSVLVSALASHGQLSEALLVYEEIKKAGHNLEPKAVISLIEEFTQFKGELDGLLLLLKEVSDLDYWVDGCFKVIMYCIQNKNLSSAILLFKQLKDKFENDEIVMEALFDAVFSLIAASKSTHLQIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAAGDDRSAHFMLKKIPQDDAEVCSVIIACQETYNGLNSMGEKKKQGKRKKKEKSKT 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1988 842 Gene3D Tetratricopeptide repeat domain 667 842 IPR011990 GO:0005515
Ssu3g1988 842 Gene3D Tetratricopeptide repeat domain 542 666 IPR011990 GO:0005515
Ssu3g1988 842 Pfam PPR repeat 600 625 IPR002885 -
Ssu3g1988 842 Pfam PPR repeat 564 583 IPR002885 -
Ssu3g1988 842 Gene3D Tetratricopeptide repeat domain 421 541 IPR011990 GO:0005515
Ssu3g1988 842 PANTHER OS02G0132600 PROTEIN 7 836 - -
Ssu3g1988 842 PANTHER OS02G0132600 PROTEIN 7 836 - -
Ssu3g1988 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Ssu3g1988 842 TIGRFAM PPR: pentatricopeptide repeat domain 496 529 IPR002885 -
Ssu3g1988 842 Pfam Pentacotripeptide-repeat region of PRORP 391 532 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1988 Ssu-Chr3 65153203 65187129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1988 375 786 Glycosyltransferase AT1G05670 20.843 6.02e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1988 - - gmx:100787964 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1988 3 65153203 65187129 Ssu3g1988 3 65153203 65187129 ECH
Ssu8g1021 8 17554380 17565205 Ssu3g1988 3 65153203 65187129 PCT