Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1006 ATGTATCCATGGTTTGCCATGGGACACTTTACCCCATTTCTTCGCCTCTCCAACAAGTTAGCCAAGAGAGGCCACAGAATCTCCAACTTCGTCCCCACAAGAACACAAACCAAACTACTACATCTCAACCTTCACCCACACCTCATCAACTTTGTCCCCATCACCGTTCCTTACGTCGATGGCCTTCCCCACGATGCCAAAACCACTTCAGACGTGTCCTTCTCTTTTTTCCCACTTATTGCCACCGCCATGGACCGCACGGATAAGGACATCGAACTTCTCCTAAGGGACCTAAAGCCACAAATTGTTTTCTTCGATTTCTCGTTTTGGCTACCCAACTTGGCTCGGAGCCTGGGAATCAAGAGTATCCAATACTTTATAATTAGTCCAGTAACTCTCGCTTTCAACGCAACACGTTCTGAAGGTGATCTCATGGAACCGCCTTCAGGGTTCCCTGATTCATCCATCAAGCTTCACGCACATGAAGCTCGTTTCCTTGCTAACCTTGGGAATTTGGAGTTTGGCAGTGGTGTTTTGTTTTACGATCGTTTCGACATAGGTACTAGGTTGTCGGATGCTATTGGGTTCAAAGGTTGCAGAGAAATAGAGGGCCCTTATGTAGACTATCTTGAAACACAATATGGGAAGCCTGTGCTACTTTCAGGGCCTCTTTTACCTGAGCCACCAAACTCAACTTTAGAAGAAAAATGGGTTGCGTGGCTTGGGGGGTTCAACCCTGGTTCTGTTATTTTCTGTGCATATGGAAGCGAAACCACTCTACAAAAAAGTCAATTTGATGAGTTGTTACTTGGTCTTGAGTTAACAGGTTTTCCATTTCTTGCAGCACTTAAGCCCCCTAATGGATTTGAGTCTATTGAAGAAGCTCTGCCAGAGGGGTTCGGAGAAAGGGTTCAGGGAAGAGGGATTGCATATGGAGGTTGGGTGCAGCAACAACTGATTCTAGGACACCCTTCTATTGGGTGCTTCGTAACACACTGTGGAGCTGCTTCTTTAACCGAGTCACTTGTGAGTGAGTGTCAGTTGGTGTTTCTACCTCGCCTAGGTTTGGATCATGTCATGAATGCACGACTGATGAGTAGAAAGTTGAAGGTTGGGGTGGAAGTGGAGAAAGGTGAGGAGGACGGATTGTTCACTAAAGAAAGTGTATGCAGAGCCGTGAAAATTGTGATGGACCAAAGGAGTGAGCTTGGAAGAGAAGTGAGAGCAAATCATGCTAAAGTGAGGAGCTTTTTACAAAGCAACAACTTGGAGTCCACCTGTGTTGATAATTTCTGTCACAAGCTTCAAGGTTTACTTTGA 1320 0.4576 MYPWFAMGHFTPFLRLSNKLAKRGHRISNFVPTRTQTKLLHLNLHPHLINFVPITVPYVDGLPHDAKTTSDVSFSFFPLIATAMDRTDKDIELLLRDLKPQIVFFDFSFWLPNLARSLGIKSIQYFIISPVTLAFNATRSEGDLMEPPSGFPDSSIKLHAHEARFLANLGNLEFGSGVLFYDRFDIGTRLSDAIGFKGCREIEGPYVDYLETQYGKPVLLSGPLLPEPPNSTLEEKWVAWLGGFNPGSVIFCAYGSETTLQKSQFDELLLGLELTGFPFLAALKPPNGFESIEEALPEGFGERVQGRGIAYGGWVQQQLILGHPSIGCFVTHCGAASLTESLVSECQLVFLPRLGLDHVMNARLMSRKLKVGVEVEKGEEDGLFTKESVCRAVKIVMDQRSELGREVRANHAKVRSFLQSNNLESTCVDNFCHKLQGLL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1006 439 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 420 - -
Ssu8g1006 439 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 1 437 - -
Ssu8g1006 439 CDD GT1_Gtf-like 1 416 IPR002213 GO:0008194
Ssu8g1006 439 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 314 400 IPR002213 GO:0008194
Ssu8g1006 439 Gene3D Glycogen Phosphorylase B; 1 236 - -
Ssu8g1006 439 Gene3D Glycogen Phosphorylase B; 237 420 - -
Ssu8g1006 439 PANTHER GLYCOSYLTRANSFERASE 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1006 Ssu-Chr8 17094073 17095392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1006 1 439 Glycosyltransferase AT5G54010 48.869 2.38e-152 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1006 K22794 - gmx:100807403 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1006 8 17094073 17095392 Ssu3g2014 3 65803733 65804655 PCT