Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2014 ATGGCATCCCCAGCTAGACAAAGAGAAGATGACATGAAAAAACCACCTTCAGGGTTCCCTGACAGTTCCATCAAGCTGCATGCACATGAAGTTCGATTCCTTGCTGCAGCAAGGAAACTGGAGTTTGGCAATGGTGTTCTTTTGTGTGATCGTATCTCAATTGGTGCAGACTTGTCAGATGCTATTGGATTCAAAGGTTGCAGAGAAATTGAAGGGCCTTATGTGGACTATCTCGAGACACAGTTTGGTAAGCCTGTTTTTCTTTCAGGGTCTCTTGTGCCTGCGCCATCCAACTCTGCTTTGGAGGCAAAATGGGGTGAATGGCTTGGTAGACTCAAGGCTAGTTCAGTGATTTACTGTGCATTTGGAACTAACAGGAATGTCATTTCTTGCAGCACTAAGCCCCCTACTGAGTTTGAGTCCATTGAGGATGCTCTCCCAAAAGGGTTCAAACAAAGGGTTCGAGAAAGGGGGGTTGTATATGGGGGATGGGTGCAGCAACAATTGATCCTAGCACACCCTTCTGTTGGATGCTTCATAACACACTGTGATGCAGCTTCTCTAACTGAGGCACTTGTGAACCAGTGTCAGTCGGTGCTGTTGCCACGCCTTGGTTCTGATTTCATCATCAATGCACGAACCATGGGAGGAAAATTGAGGGTAGGCGTTGAAGTGGAGAAAGGGGAAGAAGATGGTTTGTACACAAAGGAAAGTGTGTGCAGAGCTGTGAAAATTGTGATGGAAGATGAGAATGAGCTTGGCAGAGAAGTCAGAATAAATCACAACAAAGTGAGGAACCTCTTGCTAAGCAACAATTTTGAGTCATCTTGTGTTGATGCTTTCTGCCACAGGCTTCAGGATTTAGTCTAA 870 0.4563 MASPARQREDDMKKPPSGFPDSSIKLHAHEVRFLAAARKLEFGNGVLLCDRISIGADLSDAIGFKGCREIEGPYVDYLETQFGKPVFLSGSLVPAPSNSALEAKWGEWLGRLKASSVIYCAFGTNRNVISCSTKPPTEFESIEDALPKGFKQRVRERGVVYGGWVQQQLILAHPSVGCFITHCDAASLTEALVNQCQSVLLPRLGSDFIINARTMGGKLRVGVEVEKGEEDGLYTKESVCRAVKIVMEDENELGREVRINHNKVRNLLLSNNFESSCVDAFCHRLQDLV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2014 289 PANTHER GLYCOSYLTRANSFERASE 8 287 - -
Ssu3g2014 289 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 270 - -
Ssu3g2014 289 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2014 289 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g2014 289 CDD GT1_Gtf-like 72 250 IPR002213 GO:0008194
Ssu3g2014 289 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 163 250 IPR002213 GO:0008194
Ssu3g2014 289 Gene3D Glycogen Phosphorylase B; 136 265 - -
Ssu3g2014 289 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 8 287 - -
Ssu3g2014 289 Gene3D Glycogen Phosphorylase B; 23 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2014 Ssu-Chr3 65803733 65804655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2014 4 289 Glycosyltransferase AT5G54010 41.639 4.26e-76 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2014 K22794 - gmx:100820538 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1006 8 17094073 17095392 Ssu3g2014 3 65803733 65804655 PCT