Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0879 ATGGAACCCTCAGTTCTCAGTTCCAACAATATTggcgccaccaccaccacctccaatGACAACTGCATCAGTGACTTTGATATCATTACCTGGTTTGAAGACATGTCCAAGAACGCCGGTTCTGTTCAGACTCAGACGCTATGCCGGATTCTGAAGCAGAACTGTGGGGTGGAATATCTGAAGAAATGGTTGGGGAGCTACAATATCTCAGAGATGGATGCAAGTGCCTTGGAATCTCTTTTTACTTCTGTGGTTCCCCTTGCTTCGCATGCAGATTTCGAGccttatatacaaaaaattgcaGATGGAGACACGGGTCCTATACTCACGCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAAGGAAGGCAGAAGTTCGTACCCTTTACCCGCCACAGTGCTCAAACGACCCTTCAAACTTTCACTTTAGCAGCAGCCTATAGATCAAGGGTTTATCCCACAAGGGAAGGAGGTAGGATTCTTGAATTCATATACAGCAGCAATCAGTTCAAAACAAAAGGAGGCTTAACAGTTGGAACAGCCACAACACACTACTACGCAAGTGAGGAATTCAAAACCAAACAGGAGAAAACAAAGTCATTCACTTGCAGCCCCTATGAAGTTATTTCCGGAGGGGACTATAAACAATCCACGTACTGCCACCTCCTTCTTGGCCTCTTCTACTCTGATCACGTAGAGTTTATTTCCTCGGCCTTTGTCTATGGCATAGTGCAAGCGTTCCGCACTTTCGAAGAGGTTTGGGAAGACCTTTGCAATGACATAAGAGATGGTACTTTGAGTTCAAGAATCAAGTTACCCAAAATGAGAGAGGCTGTTTTGGGTATCATCTCTTCAAATCCCTCTTTGGCTTCAAAACTAGAAGCCACTTGTTTGGAGCTAGAACTggtggattggtttggtttggtccCAAAACTTTGGCCAAATGCCAAGTACGTTTGTTCCATAATGACAGGTTCTATGCAACCTTACTTGAAAAAGCTTAGGCATTATGCAAATGGGATGCCACTAATAAGTGCTGACTATGGTTCAACTGAGAGTTGGATAGGGGTTAATGTGGATCCTAGTTTGCCTCCAGAGAAAGTAACCTTTGCTGTAGTACCCACGTTCTCTTACTTTGAGTTCATACCACTTTATAGACAGAAACAAGATTGCAGCTCAGTAGCTGATGATTTCATGGAAGACGAGCCAATCCCACTATCGCAGGTTAAAGTTGGCCAAGAGTACGAAATAGTGCTTACAACTTTTACCGGGCTGTATAGGTGCAGACTAGGGGATGTGGTGGAAGTGGCTGGTTTTCACAATGGGACCCCAAAATTAAACTTCATATGCAGAAGAAAACTAATTCTAACGGTGAATATAGACAAGAACACAGAAAGAGACCTTCAAATAGTGGTAGAGAAGGGGTCACAGCTGCTAAACAAGTCCAAAGTTGAGCTCGTTGATTTTACTAGCTATGCGGATGTCTCAAACCAACCAGGATGCTATGTCATTTTCTGGGAGATAAAAGGTGAGGCCGAGGACAAGGTACTTGAGGCATGCTGCAGAGAAATGGATGCAGCTTTTGTTGACCATGGCTATGTGGTGTCAAGGAAAAGCAGTTCAATAGGACCTTTGATGCTTTGCATTGTAGAGAGAGGgacttttaaaaagattttggaTTATTTCGTGGCGAATGGGGCAGCACTGGGCCAGTTCAAGACCCCCAGGTGCACTAACAACCCGGTCCTCCTCAAAATTCTTGGTGCATGCACCATTAAAACGTTTCGCAGCACTGCTTATAGTTCAGTCCACTCATGA 1830 0.4224 MEPSVLSSNNIGATTTTSNDNCISDFDIITWFEDMSKNAGSVQTQTLCRILKQNCGVEYLKKWLGSYNISEMDASALESLFTSVVPLASHADFEPYIQKIADGDTGPILTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQTFTLAAAYRSRVYPTREGGRILEFIYSSNQFKTKGGLTVGTATTHYYASEEFKTKQEKTKSFTCSPYEVISGGDYKQSTYCHLLLGLFYSDHVEFISSAFVYGIVQAFRTFEEVWEDLCNDIRDGTLSSRIKLPKMREAVLGIISSNPSLASKLEATCLELELVDWFGLVPKLWPNAKYVCSIMTGSMQPYLKKLRHYANGMPLISADYGSTESWIGVNVDPSLPPEKVTFAVVPTFSYFEFIPLYRQKQDCSSVADDFMEDEPIPLSQVKVGQEYEIVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFICRRKLILTVNIDKNTERDLQIVVEKGSQLLNKSKVELVDFTSYADVSNQPGCYVIFWEIKGEAEDKVLEACCREMDAAFVDHGYVVSRKSSSIGPLMLCIVERGTFKKILDYFVANGAALGQFKTPRCTNNPVLLKILGACTIKTFRSTAYSSVHS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0879 609 Pfam GH3 auxin-responsive promoter 31 584 IPR004993 -
Ssu8g0879 609 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 23 604 - -
Ssu8g0879 609 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 23 604 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0879 Ssu-Chr8 14968624 14972756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0879 27 602 EF-hand Containing Proteins AT1G23160 35.871 2.45e-122 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0879 K14487 - gmx:100814683 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0879 8 14968624 14972756 Ssu3g2167 3 70666133 70669761 PCT