Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2167 ATGCCGCAACACAAACCAACTCCAATGGAACCAGTTCTCAgctacaacaacaatagcagCTGCAGCAATGGCAATGGCAACAGTGACTATGATATCATAAGCTGGTTTGAAGATGTCTCCCAGAACGCTGGTTCTGTGCAAACTCAGTTGCTGTGCCAGATTTTGAAGCAGAACTATGGGGTGGAATATCTCAAAAAATGGTTAGGGAATTACAATATCCTAGAAATGAACGCATGTGCGTTGGAATCCCTTTTCTCTTCTGTGGTTCCCCTTGCCTCACATGCTGATTTTGAGCCATTTATCCAACGGATTGCAGATGGGGACACAAGTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCCTAAGTTCTGGAACCACAGAGGGGAGGCAGAAGTTCGTACCCTTCACCCGCCATAGTGCACAAACTACGCTTCAAATATTCACCTTAGCAGCAGCGTATAGATCAAGGGTTTATCCTACAAGGGAAGGTGGAAGGATTCTTGAATTCATATACAGCAGCAACCGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACAGCCACAACACATTACTATGCTAGTGAAGAATTCAAAATCAAGCAGCATAAGACCAAGTCATTTACTTGCAGCCCTCAAGAAGTGATTTCTGGTGGAGACTACAAACAATCCACATATTGCCACCTCCTTCTTGGCCTCTTCTTCTCTGACCAAGTGGAGTTTATCACCTCAGCTTTCGTCTATAGCATGGTGCAAGCTTTCAGCAGTTTTGAAGAACTTTGGAGAGAAATTTGCAATGACATCAGAGATGGCACTCTGAGCTCAAGGATCAAATCACCCAAAATGAGAGAGGCTGTTTTGGATATCATCTCTCCAAACCCAAATTTGGCTTCAAAACTAGAAGCTGCTTGCCAGGAGCTAGAAGTggtggattggtttggtttaataCCTAAACTTTGGCCAAATGCTAAGTATGTGTATTCCATAATGACAGGGTCCATGCAACCATATTTGAAAAAACTTAGGCATTATGCAAATGGGTTGCCTTTGGTTAGTGCTGACTATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTGGATCCTAGTTTACCACCAGAATATGTAACATTTGCTGTGGTGCCCACTTTCTCTTACTTTGAGTTCATACCACTTCACAGGCATGAAAAAGATTTCAGTTCGGGAGCTGATGATTTCATGGAAGCTAAGCCAATTCCACTATCTCAGATTAAAGTTGGACAAGAGTATGAAGTAGTCCTCACAACTTTCACCGgACTGTACAGGTGCAGGTTGGGTGATGTGGTGGAAGTGGCTGGCTTCCACAATGGGACCCCAAAGTTGAACTTTGTATGCAGAAGAAAGCTAATTCTGACAGTAAATATAGACAAGAACACAGAAAAAGACCTTCAACTAGTGGTAGAGAGGGGGTCCCACATTCTGAATAAGGCAAAAGCTGAGCTCGTTGATTTCACTAGCTATGCGGACGTCTCAAACGAACCGGGGCACTACGTAATTTACTGGGAGATAAAAGGGGAGGTGGAGGACAATATCCTTGACGCATGTTGCACGGAAATGGACAAATCTTTTGCGGATCATGGCTATGTGGTGTCAAGGAAAACCAATTCAATAGGGCCCCTAGAGCTTTGCGTTTTGGAGAGAGGGACTTTCAAGAAGATTTTGGACAACTTCATAGCAAATGGGGCAGCATTGAGCCAATTCAAGACCCCCCGGTGCACCAATAATCATGGGCTCCTTAAAATCCTTAACACGTGCACCACCAAAAAGTTTCGTAGCACTGCCTACAGTTCAAATGAACAATGA 1842 0.4294 MPQHKPTPMEPVLSYNNNSSCSNGNGNSDYDIISWFEDVSQNAGSVQTQLLCQILKQNYGVEYLKKWLGNYNILEMNACALESLFSSVVPLASHADFEPFIQRIADGDTSPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPTREGGRILEFIYSSNRFKTKGGLTVGTATTHYYASEEFKIKQHKTKSFTCSPQEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSMVQAFSSFEELWREICNDIRDGTLSSRIKSPKMREAVLDIISPNPNLASKLEAACQELEVVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPEYVTFAVVPTFSYFEFIPLHRHEKDFSSGADDFMEAKPIPLSQIKVGQEYEVVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSHILNKAKAELVDFTSYADVSNEPGHYVIYWEIKGEVEDNILDACCTEMDKSFADHGYVVSRKTNSIGPLELCVLERGTFKKILDNFIANGAALSQFKTPRCTNNHGLLKILNTCTTKKFRSTAYSSNEQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2167 613 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 27 608 - -
Ssu3g2167 613 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 27 608 IPR004993 -
Ssu3g2167 613 MobiDBLite consensus disorder prediction 1 20 - -
Ssu3g2167 613 Pfam GH3 auxin-responsive promoter 35 588 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2167 Ssu-Chr3 70666133 70669761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2167 31 606 EF-hand Containing Proteins AT1G23160 35.364 7.01e-121 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2167 K14487 - gmx:100792358 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2167 3 70666133 70669761 Ssu3g2167 3 70666133 70669761 ECH
Ssu8g0879 8 14968624 14972756 Ssu3g2167 3 70666133 70669761 PCT