Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0876 ATGAGTAACTACGACACCAACCCCTTCGCCGAAGAAGAGGTTAATCCCTTCGCCgatGGAGCTGCTAAAGGAAAAGCATCGGGGCAATCAAATCATAGTGGTGGTGCATTCTATTCCACTaatccAGGAAGTGTTTCTGCAGCCGCAAAGCTTTCACCCCTGTCTCCTGAGCCTTATGATCGTGCAGCAACTGTTGACATTCCTCTCGATATCTCAAAGgACCTCAAAGCGAAGGAGAAGGAGCTCCAAGCCAGAGAGGCTGAATTGAAAAGAAGGGAACAGGAGCTAAAACGAAAGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAACTGGCCACCTTTTTTCCCCATCATTCATCACGACATTGCAAATGAAATACCAATACATCTTCAATCAATCCAGTATGTTGCATTTACAACATGGTTGGGTTTGGTTGTATGTCTTTTATGGAATATTGCAGCAGTTACTGTAGCTTGGATCAAAGGAGAAGGTCTTTCAATCTGGTTTCTTTCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTGATGTGGTATCGCCCTCTTTATCGTGCTACAAGGACTGATAGTGCTCTAAAGTTTAGCTGGTTTTTCTTGTGTTACGCGGTGCACATTCTCTTTTGCGTTTTTGCTGCAGTTGCTCCTCCAATTGTCTTCAAAGGGAAATCTCTCACAGGTATTCTGCCTGCGTTTGAGGTATTGGACGACAATGCATTGGTTGGGATACTCTACTTTATTGGGTTTGGATTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAGCAAGTATACACGTACTTTCGGGGCAGTGGAAAGGCTGCGGAAATGAGGCGTGAGGCTGCGAAAGGGGCCATGAGGGCAGCTCTATGA 912 0.4419 MSNYDTNPFAEEEVNPFADGAAKGKASGQSNHSGGAFYSTNPGSVSAAAKLSPLSPEPYDRAATVDIPLDISKDLKAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHDIANEIPIHLQSIQYVAFTTWLGLVVCLLWNIAAVTVAWIKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRTDSALKFSWFFLCYAVHILFCVFAAVAPPIVFKGKSLTGILPAFEVLDDNALVGILYFIGFGFFCIESLLSIWVIQQVYTYFRGSGKAAEMRREAAKGAMRAAL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0876 303 Coils Coil 72 102 - -
Ssu8g0876 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 303 IPR007273 GO:0015031|GO:0016021
Ssu8g0876 303 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 303 - -
Ssu8g0876 303 MobiDBLite consensus disorder prediction 1 39 - -
Ssu8g0876 303 Pfam SCAMP family 112 283 IPR007273 GO:0015031|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0876 Ssu-Chr8 14839839 14848735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0876 2 303 Miscellaneous Gene Families AT1G11180 63.987 2.64e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0876 K19995 - gmx:100820206 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0876 8 14839839 14848735 Ssu3g2171 3 70741379 70748880 PCT