Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2171 ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAGGTCGAGGTTAATCCCTTCGCGGATGGAGCAGCTAAAGGAAAAGGGTCAGGACAGCCAAGTCATGGTGGAGGTGCATTTTATACTACTAACCCTGGAAGTGTTCCCTCTGCAAACTCAAGGCTTTCACCCCTTCCTCCAGAGCCTTATGATCGTGGGGCAACTATTGACATCCCTCTTGATAATTCAAGGGACATCAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGACGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCCTCATTCATCATGACATTGCAAATGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGATTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTgctattatctattttatttctggTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGGGCCATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTTTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTCGCTGCAGTTGCTCCACCAATTATCTTTAAAGGAAAATCTCTCACAGGTATTTTGCCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTTATTGGGTTTGGACTTTTCTGTCTTGAGTCACTGCTGAGCATCTGGGTTATACAgCAAGTATATATGTACTTCCGCGGCAGCGGCAAGGCTGCAGTTTTAAAGCGTGAGGCTGCGAGAGGGACAATGATGGCAGCTCTATGA 918 0.4346 MSRYDPNPFDEEVEVNPFADGAAKGKGSGQPSHGGGAFYTTNPGSVPSANSRLSPLPPEPYDRGATIDIPLDNSRDIKAKEKELQAKDAELKRREQELKRREDAIARAGIVIEEKNWPPFFPLIHHDIANEIPIHLQRIQYIAFTTWLGLILCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGAPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMLHIAFCIFAAVAPPIIFKGKSLTGILPAIDVLGDNALVGIFYFIGFGLFCLESLLSIWVIQQVYMYFRGSGKAAVLKREAARGTMMAAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2171 305 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 305 IPR007273 GO:0015031|GO:0016021
Ssu3g2171 305 Pfam SCAMP family 114 285 IPR007273 GO:0015031|GO:0016021
Ssu3g2171 305 MobiDBLite consensus disorder prediction 34 52 - -
Ssu3g2171 305 MobiDBLite consensus disorder prediction 1 59 - -
Ssu3g2171 305 Coils Coil 302 305 - -
Ssu3g2171 305 Coils Coil 77 104 - -
Ssu3g2171 305 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2171 Ssu-Chr3 70741379 70748880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2171 3 305 Miscellaneous Gene Families AT1G11180 69.032 4.86e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2171 K19995 - gmx:100796729 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2171 3 70741379 70748880 Ssu3g2171 3 70741379 70748880 ECH
Ssu8g0876 8 14839839 14848735 Ssu3g2171 3 70741379 70748880 PCT