Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0872 atgAAAACGCCCAACGGCTCTCCGGTTTCTAGCTCGTCTCCGAAACCTCGTCAACATAGAAACCGCGAACCGGGTTCACGGTCTCTCCCTTCCCCTCCGAGCTCAACCACACACTCCGGCGAATGCCATTCCCCTGCCCACCGCAAATCGTCGAGCCCCGGCCGGCGACACGCGGTCACGGAGGACCCGGGTTTCACGCGCCACCAACTATGGCCCTCCTCCGCGACGGAGAAGAGAAACTCCGGCACTCTCGCCGATCACATCACCGAAGACAGAATCATAGAGCACACCGCAACTGCAAACAACGCCTCCGAGAAAAATGACGGACACATTGTAGGTGGCTCCGCGAGACACGTGGCAGGGCTCATGAGAACGCTAAGTCCTTCTCCTCGCGGAGAAAACTCTTGTGCTTCCAGAAACTCTCTTGATTCAGAATCTGAACATGGTGACACGGGAACAGCGTCGAGAAAAGGAAGGGCTCGGAGAGGAACTTCAGATTCCAACGTGGCGAACTTGAACAGTGACTCCTCCGTTTTGAAGCGGTTCAAGCTGAAGACGGCCATTAAGAGGGCTAACTCGCTTACCGGACACAAGGGTTCCAAGTCTTCGTGGGCTTTGTCTCCTGGGAGGTCGGAGTCACCGGCTATGTCGGTCGAAAGCATGGACAAACCGATGTCGTTTTCGAGCTTCAAGCACCCTACCGCTCCTACGAAGGTGAAAGGGGTGGAGAAGTTGCTCAACATGGGTTTTGATATCTTCAAGAGTAAGAAAAGTGGGTTTGGCTCTTCGCCGCCCCTTGCTTTTGTAGTTTATAACTCGGAGGTTGTTCATAGGCTTCGTTTGCTTGATAATCGTTTGATGCAATGGCGGTTTGCAAACGCTAGAGCCCAAGTTGTAAATGGAAACATTTCTTACAAGGCTGAGAGCAATTTGATGTGCGTTTGGGATGGTCTCACGAAATTAGAGCATTCTGTTCTGAAAAAGAAGATACAGTTTGTCAGAGAAAAACTTGAAATGAAGATCGCTTTTGTACTGTATTCTCAAATGAAGCTATTGGAAGCTTGGGGAGGTATGGAAAGGCAGCACTTACAAGCAACTACTGCCATCAAAGAGTGTTTGCATTCGGTTGTTTGCAGAGTTCCTCTTTTGGAAGGTGCTAAGGCGAGCAAGCAATCAACATCCATTGCTCTACGGCATGCAACAGATCTCACAGCTTccatcaaatcaattttaactactttttcatCTTCAGAGGTTGATAAAATTGCTACTATGCTATCAGAATTAGCAAAAGTTGTTGCACAAGAGAAACAACTCTTAGAAGAGTTCTATGATCTTTTCCAGAACATAAGTGTCTTTGAGGTCCTGAAACCTataattgttattctttaa 1392 0.4756 MKTPNGSPVSSSSPKPRQHRNREPGSRSLPSPPSSTTHSGECHSPAHRKSSSPGRRHAVTEDPGFTRHQLWPSSATEKRNSGTLADHITEDRIIEHTATANNASEKNDGHIVGGSARHVAGLMRTLSPSPRGENSCASRNSLDSESEHGDTGTASRKGRARRGTSDSNVANLNSDSSVLKRFKLKTAIKRANSLTGHKGSKSSWALSPGRSESPAMSVESMDKPMSFSSFKHPTAPTKVKGVEKLLNMGFDIFKSKKSGFGSSPPLAFVVYNSEVVHRLRLLDNRLMQWRFANARAQVVNGNISYKAESNLMCVWDGLTKLEHSVLKKKIQFVREKLEMKIAFVLYSQMKLLEAWGGMERQHLQATTAIKECLHSVVCRVPLLEGAKASKQSTSIALRHATDLTASIKSILTTFSSSEVDKIATMLSELAKVVAQEKQLLEEFYDLFQNISVFEVLKPIIVIL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0872 463 MobiDBLite consensus disorder prediction 143 163 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 193 214 - -
Ssu8g0872 463 Pfam QWRF family 142 441 IPR007573 -
Ssu8g0872 463 PANTHER QWRF MOTIF PROTEIN (DUF566)-RELATED 13 454 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 1 15 - -
Ssu8g0872 463 PANTHER AUGMIN FAMILY MEMBER 13 454 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 128 142 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 25 41 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 1 86 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 67 82 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 125 172 - -
Ssu8g0872 463 MobiDBLite consensus disorder prediction 193 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0872 Ssu-Chr8 14776245 14779171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0872 - - gmx:102668093 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0872 8 14776245 14779171 Ssu8g0872 8 14776245 14779171 ECH
Ssu8g0872 8 14776245 14779171 Ssu3g2178 3 70854312 70856957 PCT