Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2178 ATGCGCTCACTGTTACGTTACATTCACACATTAGAACTTCCTCTGTTCCCTGCTACCTCCGTAAAAACGCTCTGTTCTGTTTCCAACCCATCCAACatctttcattgttttcttctcatGAAGAGCGATTCCAATGACTCGTTCTCCTCTCCCAAACCCAGAACCCGCCAAGTAAGTTCCCGGTTCACGTCTCCTAACTCGATGGGTCCACCCGAACCCGGCTCAGCTTCCCCGCTTTGCCGCCGCGGGAACCGGTCGGCGAAGAGAAGCTCCGCCACTCTCGCCGATCACATCGGCAACGAGAGGCTaaaagaaagggaagaaaaccatcatcatcatcagaaACCCACAAACAGAGCAGACTCTGTTTTCTCTGTTCTCACGAAACAGAGGAGCTGCAGGGAGTTAAAAAACAACACCAACGGCTTAGAAGAAAATGGTCAAGAAGTTACCCGTAGGTCCACCGGGAAATCTTCTTCTTCGCCGGTGGTGAAGAAACCGAGTTCTCATATTGCTCCTGGAAGACACTCTATGGATGAAAACACCCTTAACAGAAACTTTCATTGTTCTAAGAGCTCAATTGATTCAGAGTCAGATAACACGAGTTTGGATTCTATTTCTCTGCCAAGAACACGGAGTTGGAGAAAAACGGGTAGGGAGGTTTCGTCTAAGTACATGGCAACAAGTGGTCAGAGAGGAGTTTCTGATTCAGACCCTTTGTCTTCTGATGATTCATGGATGTTGAGGAAGTTTATGACACAGAAAGCGATGAGGAGGGCTAATTCGCTTATTGGGTACATGAGTTCCAAGTCTCAGTGGGCATTGTCTCCTGGGAGATCAGGGTCACCGCCTTTGTCTTTGGAAAGTAAGGATAAGCCATTGTCGTTTTCGAGCTTGAGGCCTCAACAGAAGGGTGTGGAGAAGATTCTGAGCATGGGTTTTGATCTCTTTAGGACTAAGAAATCTTCAACCCGCGAAGTGGTTCATCAGTTGCGTCTGCTCGATAACCGGTTGATCCAATGGCGGTTTGCAAATGCTAGAGCAAATGCTGTAAATCGTAGCATGTCTCTTCAGGCTGAGAGCAATTTGATATGTGTTTTGGATGGCCTAGCCCAGTTGCAACATTCAGTGGTGCAAAAGAAGATAGAGCTTGAGAGAGAAAAGCTTGAGATGAAGCTAAATTTTGTACTGCATTCTCAAATAAAGCTATTGGAAACGTGGGGGAGTATGGAAAGGCAACATCTAGCTGCAATTACCATGATGAAAGAGTCTTTGCATTCTGTTGTATGCAAAGTTCCTCTTTTGGAAGGTGCAAAGTTGAATATACAAATAGCGTCATTTGCTCAGCGGCATGCATCTGATGTCACTGATTCCATCAAGTCAGTGTTATCTGCTTTTTCACCCTTGACTGCTGAGTTGCTATCAGAATTAGCAAGAGTTGTTGCGCAAGAGAAGTTCCTCTTACAGGAATTCAATGATATCTTCCACAACGTGTGTGTCCTTGAGCTTAAAGAAAGGAGCCTGATGTGCAGTCTCATTCAACTCAAGTGTTGA 1554 0.4427 MRSLLRYIHTLELPLFPATSVKTLCSVSNPSNIFHCFLLMKSDSNDSFSSPKPRTRQVSSRFTSPNSMGPPEPGSASPLCRRGNRSAKRSSATLADHIGNERLKEREENHHHHQKPTNRADSVFSVLTKQRSCRELKNNTNGLEENGQEVTRRSTGKSSSSPVVKKPSSHIAPGRHSMDENTLNRNFHCSKSSIDSESDNTSLDSISLPRTRSWRKTGREVSSKYMATSGQRGVSDSDPLSSDDSWMLRKFMTQKAMRRANSLIGYMSSKSQWALSPGRSGSPPLSLESKDKPLSFSSLRPQQKGVEKILSMGFDLFRTKKSSTREVVHQLRLLDNRLIQWRFANARANAVNRSMSLQAESNLICVLDGLAQLQHSVVQKKIELEREKLEMKLNFVLHSQIKLLETWGSMERQHLAAITMMKESLHSVVCKVPLLEGAKLNIQIASFAQRHASDVTDSIKSVLSAFSPLTAELLSELARVVAQEKFLLQEFNDIFHNVCVLELKERSLMCSLIQLKC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2178 517 MobiDBLite consensus disorder prediction 222 240 - -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 134 183 - -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 45 70 - -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 272 292 - -
Ssu3g2178 517 PANTHER QWRF MOTIF PROTEIN (DUF566)-RELATED 52 516 - -
Ssu3g2178 517 PANTHER AUGMIN FAMILY MEMBER 52 516 - -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 134 166 - -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 45 96 - -
Ssu3g2178 517 Pfam QWRF family 202 489 IPR007573 -
Ssu3g2178 517 MobiDBLite consensus disorder prediction 211 240 - -
Ssu3g2178 517 Coils Coil 370 390 - -
Ssu3g2178 517 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2178 Ssu-Chr3 70854312 70856957 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2178 - - gmx:102660879 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2178 3 70854312 70856957 Ssu3g2178 3 70854312 70856957 ECH
Ssu8g0872 8 14776245 14779171 Ssu3g2178 3 70854312 70856957 PCT