Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0871 ATGAGGCGAAGAGCGACGGATTTTCGCAGGCCAGTGCGGAGGACGGTTCCAGATGCGTTGTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTCTATATTCTGAGCAAAGGGAACAAAATTGAGTCCAGACCAGCGTTGTCTAAGAGAACTTACAAGCATGATAAGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAGCTCTAACTCCTTCACAAGACAACTCAATGATCAGATATCCCTGGCAAAAGCTTTTGTTGTAATTGCAAAAGAAAGTAACAATCTCCAATTTGCTTGGGAATTAAGTGCCCAGATCCACAATTCACAGATGCTCCTCTCAAATGCTGCCACTAGGCGTGCTCCTTTAACAACCAGGGAAACAGAAAGGGCTATCCATGATATGGCATTATTGTTATACCAGGCCCAGCAGCTTCATTATGATAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAGCTCTTGAGGAACAGATGAATTCTGTTAGTGAAAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGCCTGTACTGTCTTGGTGTCCGGTTGACAACAGAATGgttcaaaaactttaatttgcAAAAGAAATTGAAGGACAAAAGGCAAGTGGAGATGAAGCTTAAGGATAACAATCTTTACCACTTTTGTGTTTTCTCTGATAACATTCTTGCAACTTCAGTTGCGGTCAATTCAACTGCAATGAATTCTAAAAATCCTAATATGATTGTTTTCCACCTTGTCACTGATGAAATAAACTATGCTGCAATGAAGGCATGGTTTGCCATGAATGATTTCCGTGGAGTGACTGTGGAAGTTCGGAAGTTTGAAGACTTTACTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGACTCAGAAATACAGAGCTACTACTTTTCTGGCAACAACAATGATGGCAGGACACCTATCAAGTTTCGTAACCCTAAATACTTATCCATGCTTAATCACCTGAGGTTCTATATCCCTGAAGTTTTTCCTGCACTAAAGAAGGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTCTCTGTTCTTTTTTCCATTGATTTGAATGGGAATGTAAATGGAGCTGTTGAAACATGCATGGAGACATTTCATAGATACCATAAATACTTGAACTACTCCCATCCTCTCATACGTGCACATTTTGATCCTGATGCTTGCGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTGAATGGAGGAAAAAGAATGTAACTGGCATCTACCACTACTGGCAGGAAAAGAACGTAGACCGGACATTGTGGAAACTCGGTACCTTGCCGCCTGGACTGTTGACATTTTATGGATTAACTGAGCCCTTGGATCCATCATGGCATGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATAGAGAGAGGAGCTGTACTACACTTCAATGGGAATTCCAAACCATGGTTGAAGATTGGGATTGAGAAGTACAAGCCCCTGTGGGAAAAATATGTTGAATACTCTCATCCTTTATTGCAACAGTGTAACTTTCATTGA 1602 0.4039 MRRRATDFRRPVRRTVPDALWWALCCAVILLFVYILSKGNKIESRPALSKRTYKHDKIMEGLNITEEMLSSNSFTRQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQMLLSNAATRRAPLTTRETERAIHDMALLLYQAQQLHYDSATMIMRFKAKIQALEEQMNSVSEKSSKYGQIAAEEVPKSLYCLGVRLTTEWFKNFNLQKKLKDKRQVEMKLKDNNLYHFCVFSDNILATSVAVNSTAMNSKNPNMIVFHLVTDEINYAAMKAWFAMNDFRGVTVEVRKFEDFTWLNASYVPVLKQLQDSEIQSYYFSGNNNDGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSVLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKYVEYSHPLLQQCNFH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0871 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
Ssu8g0871 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
Ssu8g0871 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 528 IPR029044 -
Ssu8g0871 533 CDD GT8_like_1 228 520 - -
Ssu8g0871 533 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 3 533 - -
Ssu8g0871 533 Coils Coil 155 175 - -
Ssu8g0871 533 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0871 Ssu-Chr8 14768971 14771831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0871 1 533 Glycosyltransferase AT2G20810 80.037 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0871 K13648 - gmx:100792018 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0871 8 14768971 14771831 Ssu8g0871 8 14768971 14771831 ECH
Ssu8g0871 8 14768971 14771831 Ssu3g2179 3 70861625 70864145 PCT