Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2179 ATGAGGCGAAGGGGTGCAGATTTTCGAAGGCCAGGGAGGAGGAGGCTCCAGGACGCGGTGTGGTGGACATCGTGTTGCGTTGtgcttcttttctttatttatactCTCACCAGAGGCACCACCATCATTGACTCCAATCATCATTTCTCCAGGAGAACTTCCAGGCATGACAGGGTTATAGAAGGCTTCAATGTTACGGAAGAGATGTTAAGCCCTGACTCAGTGGCCAGACAAATTAATGATCAGATCTCCATAGCAAAAGCTTTTGTTGTAATTGCCAAAGAAAGTAATAATCACCAATTTGCTTGGGAGTTAAGTGCTCAGATCCGCATTTCACAGATTTTCCTCTCAAATGCTGCCACTAGGCGTGCTCCTTTGACAATCAAGGAATCGGAGCATGCTATTCGCGATATGGCATTATTACTATATCAGGCCCAGCAGCTCCATTATGACAGTGCGACCATGATCATGAGACTGAAAGGAAAAATTCAAGCCCTTGAAGAACAGATGAATTCTGCAAGTGAGAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGAGCCTATATTGCCTTGGTGTCAGGCTGACATCTAAATGGTTCAACAATCTTAGCTTGCAAAAGAAATTGAAGGACAAAAGACAAGTGGAGATGAAACTTAAGGATAATGATCTTTACCACTTCTGTGTCTTCTCTGATAACATTCTTGCCACTTCAGTTGTGGTCAATTCAACtgcaataaattctaaaaatccAGATAAGGTTGTTTTCCACCTTGTCACAGATGAAATAAATTATGCTTCAATGAAGGCATGGTTTTCTTTGAACGATTTCCGAGGGGTGACAGTTGAAGTTCAAAAGTTTGAAGACTTCAGTTGGTTAAATGCTTCATATGTTCCCGTGCTTAAGCAGCTTCAAGACTCAGAGATACAGAACTATTACTTCAAAGGCAACAGTGATGATAGCAAGACCCCCATCAAGTTCCGGAATCCAAAATATCTGTCCATGCTTAACCACATGAGGTTCTACATCCCTGAAGTTTTTCCTGAGCTGAAGAAGGTGGTGTTCCTGGACGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATTTGAATGGTAATGTTAATGGAGCTGTTGAGACATGCATGGAGACATTTCATAGATACCATAAATATTTGAACTACTCACACCCTCTAATAAGAGCACATTTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTGTTTGATTTGGTTCAATGGAGGAATAGGAATGTAACTGGCATCTACCACTATTGGCAAGAAAAGAATGCAGACAGAACATTGTGGAAACTTGGTACCTTGCCACCTGGGTTGTTAACCTTTTATGGGCTAACTGAGCCCTTGGATCCATCATGGCATGTATTGGGTTTTGGCTACACAAATGTTGATCCTCAGTTGATAGAAAGGGGTGCTGTTCTACACTTCAATGGGAACTCCAAACCGTGGTTGAAGATTGGGATGGAAAAGTACAAGCCCCTGTGGGAAAAATACGTGGATTATTCTCACCCTTTATTGCAACAGTGTAATTTTCATTGA 1605 0.41 MRRRGADFRRPGRRRLQDAVWWTSCCVVLLFFIYTLTRGTTIIDSNHHFSRRTSRHDRVIEGFNVTEEMLSPDSVARQINDQISIAKAFVVIAKESNNHQFAWELSAQIRISQIFLSNAATRRAPLTIKESEHAIRDMALLLYQAQQLHYDSATMIMRLKGKIQALEEQMNSASEKSSKYGQIAAEEVPKSLYCLGVRLTSKWFNNLSLQKKLKDKRQVEMKLKDNDLYHFCVFSDNILATSVVVNSTAINSKNPDKVVFHLVTDEINYASMKAWFSLNDFRGVTVEVQKFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNSDDSKTPIKFRNPKYLSMLNHMRFYIPEVFPELKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVQWRNRNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGMEKYKPLWEKYVDYSHPLLQQCNFH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2179 534 Coils Coil 156 176 - -
Ssu3g2179 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 4 534 IPR029993 GO:0047262
Ssu3g2179 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 529 IPR029044 -
Ssu3g2179 534 CDD GT8_like_1 229 522 - -
Ssu3g2179 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 532 IPR029044 -
Ssu3g2179 534 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 4 534 - -
Ssu3g2179 534 Pfam Glycosyl transferase family 8 236 508 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2179 Ssu-Chr3 70861625 70864145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2179 1 534 Glycosyltransferase AT2G20810 77.840 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2179 K13648 - gmx:100792018 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2179 3 70861625 70864145 Ssu3g2179 3 70861625 70864145 ECH
Ssu8g0871 8 14768971 14771831 Ssu3g2179 3 70861625 70864145 PCT