Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0864 ATGGCCGCtctcacttctctctctttctcagcAGTGACTCAATGCTTGGAAAGAAAACTAACCCTCTCTTCCACTCGTTTTCCCGCTTCCTCTTTAGAACTCTTTGGGTTTCGCACCCATTTCTCGTACCACTACGTGGGTGGTGTTCGAGCTTCCAATTCCGCGTCTAAACTGGTTGCTCAATGCATGTCTTCTGCTACAGATGTTCCTTCTGTTTCTGAGACAAAGTTAAATTTCCTCAAGACATATAAGCGACCAATCCCTAGTATCTACAACACTGTGCTGCAGGAGCTAATGGTGCAGCAACATTTAATGAGATACAAGAGATCATACCGCTATGATCCTGTATTCGCTCTTGGTTTTGTCACTGTTTACGATAAACTCATGGAAGGGTATCCTAGTGACGAGGACCGAGATGCCATCTTCCAAGCCTACATTAAGGCATTGAAGGAAGATCCAGAAGAATACAGAATAGATGCACGAAAGCTGGAAGAGTGGGCTCGGGTTCAAAACCCAACTTCCCTTGTTGAGTTTTCATCCAAAGATGGAGAAGTTGAGGGGATTTTAAAGGATATTGCAGAAAGAGCAGGGGGAAAAGGGGAATTCAGTTATAGTCGTTTCTTTGCAGTTGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCCACGGAACCAACAATTTTGGACAAGCTTTGTGCGGCTTTGAACATCAACAAAAGAAGTGTTGATTGGGACTTGGATGTGTATCGTAACCTGCTTTCAAAGTTGGTTCAAGCAAAAGAGCTGCTAAAGGAATATGTTGACAGggagaagaagaaaagagaagaaagggcTGAACCACAAAAGGCTAATGAGGCCATCACAAAATGTTTGGGACAACAGTTGCCTGGTCTGCAGTTATGGTCTTCTGAAACAATCTCCTACTGA 924 0.4134 MAALTSLSFSAVTQCLERKLTLSSTRFPASSLELFGFRTHFSYHYVGGVRASNSASKLVAQCMSSATDVPSVSETKLNFLKTYKRPIPSIYNTVLQELMVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKEDPEEYRIDARKLEEWARVQNPTSLVEFSSKDGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDWDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANEAITKCLGQQLPGLQLWSSETISY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0864 307 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 287 IPR017499 GO:0010207|GO:0015979
Ssu8g0864 307 Coils Coil 248 278 - -
Ssu8g0864 307 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Ssu8g0864 307 Pfam Thylakoid formation protein 72 276 IPR017499 GO:0010207|GO:0015979
Ssu8g0864 307 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 287 - -
Ssu8g0864 307 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 70 273 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0864 Ssu-Chr8 14655139 14658328 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0864 - - gmx:100814341 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0864 8 14655139 14658328 Ssu8g0864 8 14655139 14658328 ECH
Ssu8g0864 8 14655139 14658328 Ssu3g2185 3 71005924 71009697 PCT