Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2185 ATGGCAGCTGTTACTTCTTCCTTCACTTTCTCCGCACTCACCCAATCTTCGCAGAGGAGTCTCGCCCTCTCCTCCAATTCACAAACCTTTCGCTTCCGCGTCGGTTTCTCGTGCCACTATGTTGGAGTTCGAGCTGCCAATTCTGCTTCCAAAATGGTTCTTCGGTGCTCCTCTTCCGTCACAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACGGTGCTGCAGGAGCTCATTGTCCAGCAACATTTAATGAGATACAAGAGATCATATCGCTATGACCCTTTATTTGCCCTTGGCTTCGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAAAGAAGATCCTGAGCAATACAGAGTAGATGCAAAGAAATTGGAAGAGTGGGCTCGGGCTCAAAACTCAACTTCACTAATAGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGGATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTTGCAATAGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCGGCTTTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGACGTTTATCGTAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGCTGCTAAAGGAATATGTTGACAGggagaagaagaaaagagaagaaagggcTGAACCACAAAAGGCTAATGAGGCTATTACACAACAGCAATTTTCTAGCCTTTAG 867 0.4268 MAAVTSSFTFSALTQSSQRSLALSSNSQTFRFRVGFSCHYVGVRAANSASKMVLRCSSSVTDPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPLFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAALNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKANEAITQQQFSSL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2185 288 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 281 IPR017499 GO:0010207|GO:0015979
Ssu3g2185 288 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 281 - -
Ssu3g2185 288 Coils Coil 242 272 - -
Ssu3g2185 288 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 61 267 IPR017499 GO:0010207|GO:0015979
Ssu3g2185 288 Pfam Thylakoid formation protein 65 270 IPR017499 GO:0010207|GO:0015979
Ssu3g2185 288 MobiDBLite consensus disorder prediction 263 288 - -
Ssu3g2185 288 Hamap Protein Thf1 [thf1]. 60 268 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2185 Ssu-Chr3 71005924 71009697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2185 - - gmx:100779964 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2185 3 71005924 71009697 Ssu3g2185 3 71005924 71009697 ECH
Ssu8g0864 8 14655139 14658328 Ssu3g2185 3 71005924 71009697 PCT