Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0830 ATGTCTAAGATGTTGGGGTTGTTTGTGGGGCTTTTGTTGGTGGGGTTGGCTGCTTCTGCCAAGTTTGATGAACTCTTCCAACCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTTAAACTTGATAGTTATTCTGGTGCTGGGTTTGCATCCAAGAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCAGACGGCCCAAATCACAACGAATTTGATTTTGAGTTTCTGGGCAACACCACTGGTGAACCTTACTCGGTCCAAACGAACGTGTATGTGAATGGCGTTGGTAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACACCATCTTCTGGACCCAGCGACAAGTTATATTTCAAGTGGATGAGACGCCAATTAGGGTGCATACAAATCTGGAGCATAAAGGCCTTCCCTTCCCGAAAGACCAAGCCATGGGTGTGTACAGCTCTATATGGAATGCAGATGATTGGGCCACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCATTGCCGCGTACAAGGACTTCAAAATCGACGCGTGTGAGTGCCCCGGGCCAATGACATCAGCGGATAACGCTAAGAAATGTAGCAGCAGTGAGGACAAGAAGTATTGGTGGGACGAACCCACAATGTCTGAACTCACCTTGCACCAGAGCCACCAGCTCATGTGGGTTAGGGCTAACCACATGGTCTATGACTATTGCACCGATACTGCTAGGTTCCCCGTCACACCTGCCGAGTGTGTCCATCACCGTCACCACTGA 870 0.4977 MSKMLGLFVGLLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDSYSGAGFASKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYTIFWTQRQVIFQVDETPIRVHTNLEHKGLPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIAAYKDFKIDACECPGPMTSADNAKKCSSSEDKKYWWDEPTMSELTLHQSHQLMWVRANHMVYDYCTDTARFPVTPAECVHHRHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0830 289 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu8g0830 289 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Ssu8g0830 289 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
Ssu8g0830 289 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Ssu8g0830 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Ssu8g0830 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
Ssu8g0830 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu8g0830 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 287 IPR044791 GO:0004553
Ssu8g0830 289 PIRSF EndGlu_transf 2 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu8g0830 289 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Ssu8g0830 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9 287 - -
Ssu8g0830 289 Gene3D - 13 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0830 Ssu-Chr8 13918445 13920801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0830 52 288 Glycoside Hydrolase AT4G03210 77.637 7.66e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0830 K08235 - gmx:100801567 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0830 8 13918445 13920801 Ssu8g0830 8 13918445 13920801 ECH
Ssu3g2223 3 71991421 71993697 Ssu8g0830 8 13918445 13920801 PCT