Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2223 ATGATGTCTGGGTCCTTGGGATTGTTTGTGGGTCTTATGTTGGTGCTGGGGGTGACTGGGACTATGGCTGCCCCTTCCAAGTTTGATGAACTCTTCCAACCAAGTTGGGCTTTTGACCATTTCATTCATGAAGGAGATCTCCTTAAACTCAAACTTGACAACTATTCCGGTGCTGGTTTTGCATCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTGGTGGAAGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCGGACGGTCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGCAACACCTCAGGGGAACCATACTCGGTTCAAACCAACGTGTATGTTAACGGAGCGGGCAACAGGGAGCAGAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTCCACGAATACTCTATCTTCTGGAATCAACGTCAAGTAGTGTTTATGGTTGATGAAACGCCAATAAGGGTGCACACAAACATGGAGCACAAGGGAATTGCTTTTCCTAAAGACCAACCCATGGGTGTGTACAGTTCTATTTGGAATGCTGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACGGATTGGAGCCACGCACCCTTCATTGCCACCTACAAGGTGTTTGAAATCAATGCGTGCGAGTGTCCTGTGTCGGTGGCTGCAGGGGAAAATGCTAAGAGGTGCAGCAGCAGTGAGGGCAAGAAGTATTGGTGGGACGAGCCTAATTTGTCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCCAGGCACATTTTCTATGACTATTGCACTGACACTGCTAGATTCCCAGTCACGCCTGTTGAGTGTGTCCATCACCGTCACAACTGA 888 0.4865 MMSGSLGLFVGLMLVLGVTGTMAAPSKFDELFQPSWAFDHFIHEGDLLKLKLDNYSGAGFASKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTSGEPYSVQTNVYVNGAGNREQRLNLWFDPTKDFHEYSIFWNQRQVVFMVDETPIRVHTNMEHKGIAFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKVFEINACECPVSVAAGENAKRCSSSEGKKYWWDEPNLSELNLHQSHQLMWVRARHIFYDYCTDTARFPVTPVECVHHRHN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2223 295 CDD GH16_XET 23 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu3g2223 295 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu3g2223 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 293 IPR044791 GO:0004553
Ssu3g2223 295 Gene3D - 15 295 - -
Ssu3g2223 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 6 293 - -
Ssu3g2223 295 Pfam Glycosyl hydrolases family 16 31 206 IPR000757 GO:0004553|GO:0005975
Ssu3g2223 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 214 IPR000757 GO:0004553|GO:0005975
Ssu3g2223 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 293 IPR013320 -
Ssu3g2223 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu3g2223 295 PRINTS Glycosyl hydrolase family 16 signature 58 76 IPR008264 GO:0004553|GO:0005975
Ssu3g2223 295 PRINTS Glycosyl hydrolase family 16 signature 134 151 IPR008264 GO:0004553|GO:0005975
Ssu3g2223 295 PRINTS Glycosyl hydrolase family 16 signature 116 129 IPR008264 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2223 Ssu-Chr3 71991421 71993697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2223 58 294 Glycoside Hydrolase AT4G03210 74.262 4.10e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2223 K08235 - gmx:100785982 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2223 3 71991421 71993697 Ssu8g0830 8 13918445 13920801 PCT