Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0787 ATGGGTTCAGCTGAGAAAGAACCACTGTTAGCGTCGTCTAGGGAGGGAACTCCTCAATTAAACTCAAAGCACGAGCTGTCGGATGGGGAACTCGAGAGAATTCTCTCAGACAACACCGTCCCTTTCCTCAAACGTGTGGGACCTGCCACGTGGATCGAGTTGAAGCTCCTCTTCTTCCTCGCTGCCCCTGCCGTCGTTGTCTATCTCATCAACTACGTCATGTCCATGTCCACCCAAATCTTCTCCGGTCACCTCGGTAACCTCGAACTCGCCGCCGCCTCCCTCGGCAACACCGGCATCCAAATCTTCGCCTATGGCCTCATGTTGGGAATGGGGAGTGCCGTTGAGACGCTATGCGGGCAAGCATTTGGTGCTCAGAAGTTTGATATGCTAGGGGTGTACTTGCAAAGGTCAAcgattcttctttctttggcGGGCGTTGTTTTGACCGTAATATATGTCTTCAGCGAGCCGGTTTTGATTTTTCTCGGGGAATCGCCGAGAATCGCTTCAGCCGCAGCTCTCTTTGTGTACGGCCTCATTCCCCAGATCTTCGCGTACGCTGTGAACTTCCCCATTCAGAAGTTCCTCCAAGCGCAGAGCATAGTGGCCCCCAGCGCGTACATTTCAGCCGCCACGCTGGTGGTCCACCTCGTGCTGAGTTGGGTCGCTGTCTACAAAATTGGGTTGGGCCTGCTGGGCGCGTCCTTGGTGCTCAGCCTGTCGTGGTGGATCATTGTAATTGCTCAGTTTGTGTTTATTGTGAAGAGTGAAAGGTGTAAGCGCACGTGGCAGGGGTTCACATGGGAAGCGTTTTCGGGGTTACCGGGGTTCTTCAAGTTGTCCGCAGCATCTGCAGTGATGTTGTGTCTGGAGACGTGGTATTTCCAGATTCTGGTTTTGCTCGCGGGGCTTCTTCCTCAACCCGAGTTGGCTCTTGATTCCCTTTCTATttgTACCACAATTTCTGGATGGGTGTTCATGATCTCTGTTGGATTCAACGCAGCTGCAAGCGTGAGGGTGAGCAACGAACTAGGAGCAAGAAATCCAAAATCAGCCTCGTtttcggtggtggtggtgacattgatTTCTTTCATAATATCAGTTATTGCAGCACTCGTGGTTCTTGCATTAAGGGATGTCATTAGCTATGCCTTCACAGGGGGTGAAGAAGTTGCTGCTGCAGTTTCAGATCTTTGCCCACTGCTTGCTCTTGCTCTTCTCCTCAATGGCATTCAACCCGTCTTATCCGGGGTGGCTGTTGGATGTGGATGGCAAACTTTCGTAGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCATACCATTGGGTTCAGTTCTcggcttttattttaaatttggtgcCAAGGGAATATGGCTGGGAATGCTAGGTGGCACCGTTATGCAAACAATTATTCTAATGTGGATCACATTTAGAACGGATTGGACTAAGGAGGTAGAGGAAGCAGCCAAGAGGTTGAACAAATGGGAGAACAAGAAGGAGGAGCCACTTCTAAACTGA 1524 0.4843 MGSAEKEPLLASSREGTPQLNSKHELSDGELERILSDNTVPFLKRVGPATWIELKLLFFLAAPAVVVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAQKFDMLGVYLQRSTILLSLAGVVLTVIYVFSEPVLIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISAATLVVHLVLSWVAVYKIGLGLLGASLVLSLSWWIIVIAQFVFIVKSERCKRTWQGFTWEAFSGLPGFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFIISVIAALVVLALRDVISYAFTGGEEVAAAVSDLCPLLALALLLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGSVLGFYFKFGAKGIWLGMLGGTVMQTIILMWITFRTDWTKEVEEAAKRLNKWENKKEEPLLN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0787 507 Pfam MatE 285 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g0787 507 Pfam MatE 63 223 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g0787 507 TIGRFAM matE: MATE efflux family protein 63 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g0787 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 493 - -
Ssu8g0787 507 MobiDBLite consensus disorder prediction 1 25 - -
Ssu8g0787 507 PANTHER PROTEIN DETOXIFICATION 19 493 - -
Ssu8g0787 507 CDD MATE_eukaryotic 53 489 IPR045069 GO:0042910|GO:1990961
Ssu8g0787 507 Coils Coil 480 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0787 Ssu-Chr8 12957578 12965314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0787 K03327 - gmx:100795338 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0787 8 12957578 12965314 Ssu8g0787 8 12957578 12965314 ECH
Ssu8g0787 8 12957578 12965314 Ssu3g2247 3 72383688 72390856 PCT